PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G13120.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 221aa    MW: 22777.1 Da    PI: 9.6966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G13120.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.000936786221
                     EETTTTEEESSHHHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                     +C+ Cg+ F ++  L  H+r
  ORUFI02G13120.1 67 PCTECGRQFLSWKALFGHMR 86
                     5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0526688IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.126688IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-56788No hitNo description
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
PfamPF139124.0E-76890IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-5162189No hitNo description
PROSITE profilePS501579.827167194IPR007087Zinc finger, C2H2
PfamPF139127.9E-11167190IPR007087Zinc finger, C2H2
SMARTSM003553.9167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAQQHSPPPP PAPPSPPPAL PCDPMPPPPR HDDTTLTLSL APPAAARPLQ AMVARAKCSS  60
PTGDAPPCTE CGRQFLSWKA LFGHMRCHPE RHWRGITPPG GGGAGAASST AASQFTLRER  120
EVAASLLMLS GAHPARSGAG KGKGKKRLLA PAAAAAPHHS PATCADHKCA VCHRGFATGQ  180
ALGGHKRCHW PDRSCADQAI SMLAVSTAGS SSVLIDQKSA F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039880.0AP003988.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1057_D08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878826.11e-148zinc finger protein ZAT3-like
TrEMBLA0A0E0NDC51e-153A0A0E0NDC5_ORYRU; Uncharacterized protein
STRINGORUFI02G13120.11e-154(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-20C2H2-like zinc finger protein