PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G18860.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1029aa    MW: 110857 Da    PI: 8.3949
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G18860.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.1e-13557600447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT eE+ ++++++  +G+g+Wk+ a+++ k+++  q+ s++qk+
  ORUFI02G18860.2 557 WTREEHSQFLHGISTYGKGNWKALASEFVKTKSSTQIASHYQKF 600
                      ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.7201.7E-4842267IPR016040NAD(P)-binding domain
SuperFamilySSF517353.1E-4644334IPR016040NAD(P)-binding domain
PfamPF001065.0E-3850262IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.3E-175168IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.3E-17126137IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.3E-17196212IPR002347Short-chain dehydrogenase/reductase SDR
PROSITE patternPS000610209237IPR020904Short-chain dehydrogenase/reductase, conserved site
PRINTSPR000812.3E-17222241IPR002347Short-chain dehydrogenase/reductase SDR
PRINTSPR000812.3E-17242259IPR002347Short-chain dehydrogenase/reductase SDR
SMARTSM007170.1409459IPR001005SANT/Myb domain
SuperFamilySSF466893.07E-6411458IPR009057Homeodomain-like
PROSITE profilePS500905.494413457IPR017877Myb-like domain
PROSITE profilePS5129412.687549605IPR017930Myb domain
SuperFamilySSF466893.09E-13550606IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-10552602IPR006447Myb domain, plants
SMARTSM007173.2E-8553603IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-9556600IPR009057Homeodomain-like
PfamPF002491.5E-9557599IPR001005SANT/Myb domain
CDDcd001677.62E-8557600No hitNo description
Gene3DG3DSA:3.40.50.7203.3E-55691923IPR016040NAD(P)-binding domain
SuperFamilySSF517351.19E-54695961IPR016040NAD(P)-binding domain
PfamPF001064.6E-43701889IPR002347Short-chain dehydrogenase/reductase SDR
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1029 aa     Download sequence    Send to blast
MGRVYLPIHS VLMHVVAALV VLVYIPLSVP VRLFLWAFVK PLRREQLRGK VVLITGASSG  60
IGEELAYQYA SKGASLALVA RRKQALKSVA AAARERGAPD VLVLDADVSD AGQSRRAVEE  120
TIAHYGKLNH LVANAGIWST CPFDEITNIT AFTTIMISCT GYFEACNNKS KGIVYMNFKD  180
VNFWGAVYPT YYALPHLKAS RGKLVVCSSA AGTVATSRMS FYNASKAAVL RFYETLRAEL  240
GSEVGVTILT HGYVESEMTM GKAVQKDGVL VVDQEARDVQ IGVFPVGGVG AMCRVAMDGI  300
RRGDRYVTWP SVYRPLQLVA CLAPEIVSWL SYAMYNTKAG GGAPLSKRAL DATGARRFFP  360
EGLRRNPVVI KTDEECDGDE GVAAYDATAT GNGDGAAPRP AAAEPAAPLS SVWTRRDEKL  420
LEMLLWRWQL DPHWDRLAAE LGGKTATQVF DRYVCLADEL RLVMAAPAVD TPPAWDVQDE  480
REAAVAPLPG LEADAAAGAG ESAEVTAIGI AAAASPNAAA TSAPTIGGGV VLKSRELKNP  540
RKTRMAGGGP RKKAEMWTRE EHSQFLHGIS TYGKGNWKAL ASEFVKTKSS TQIASHYQKF  600
CIREEKRRLS KCKRASIHDI VSPTTTTSAP ESAGAGPSAP PCALIESEQK GEMDLYLMFH  660
SVLMHVAAAL VVLVYIPLSM PVKLFLWAFV KPLRKESLRG KVVLITGASS GIGEELAYQY  720
AAQGACLALV ARRKKALEGV AAAALERGSP DVLVLPADVS DADQSRRAVE ETVAHFGKLN  780
HLVANAGIWS SCSFDEVTNI TAFTKMMDVN FWGSVYPTYY ALPHLKASKG KLVVSCSAAG  840
TVGTSRMSFY NATKAAQLRF YETLRAELGS EVGITVLTPG YVESEITKGK GIQSGGDVAV  900
NEEARDEQIG VFPVGRVAEL GEVAMDGIRA GDWYVTWPSL FRPLQLVACL APGVLDWACR  960
ALYGTRKGAR PPLGKRIMEA TGMKRLFPEA LRRNPAIKTE DEEYCDGEEG YGAADDAAAA  1020
YLLQCRKGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3lz6_A1e-22428952208Corticosteroid 11-beta-dehydrogenase isozyme 1
3lz6_B1e-22428952208Corticosteroid 11-beta-dehydrogenase isozyme 1
3lz6_C1e-22428952208Corticosteroid 11-beta-dehydrogenase isozyme 1
3lz6_D1e-22428952208Corticosteroid 11-beta-dehydrogenase isozyme 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194710.0AK119471.1 Oryza sativa Japonica Group cDNA clone:001-134-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623736.10.011-beta-hydroxysteroid dehydrogenase 1B
TrEMBLA0A0E0NFD60.0A0A0E0NFD6_ORYRU; Uncharacterized protein
STRINGORUFI02G18860.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-16MYB family protein