PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G19470.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 244aa    MW: 24839 Da    PI: 10.929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G19470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-2070119255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa+a++ a+++++g
  ORUFI02G19470.1  70 HYRGVRRRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAAAAYDDAALRFKG 119
                      7********.**********9...3.35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-3269128IPR001471AP2/ERF domain
SMARTSM003804.7E-3470133IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2270128IPR016177DNA-binding domain
CDDcd000181.30E-1670128No hitNo description
PfamPF008471.2E-1370119IPR001471AP2/ERF domain
PROSITE profilePS5103225.13270127IPR001471AP2/ERF domain
PRINTSPR003671.7E-117182IPR001471AP2/ERF domain
PRINTSPR003671.7E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSRQPIGSG GGGAPPDWHD VEPQWQPVDD VVLARNPPAG RGRPVGPSAA AAAAALQAVE  60
AQGAAAAERH YRGVRRRPWG KWAAEIRDPN KAARVWLGTF DTAEAAAAAY DDAALRFKGA  120
KAKLNFPERV RGRTGQGGFL VSPAVPRPPP HGVPAPAPAV APAPFPDLIQ YARLLRSGED  180
AAAAAAVAGI AATAAPAAQI LDFAAQRLVG VSPAMAPRPP STLPTTTTAA SSPSAWPHGG  240
GHGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2369130466ATERF1
3gcc_A2e-2369130466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313300.0CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623923.16e-99ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0NFM11e-165A0A0E0NFM1_ORYRU; Uncharacterized protein
STRINGORUFI02G19470.11e-166(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2696255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-25related to AP2 6l