PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G21050.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 62aa    MW: 6526.55 Da    PI: 12.0096
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G21050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.78.1e-103354224
              AP2  2 gykGVrwdkkrgrWvAeIrdpse 24
                     +y+GVr+++ +g+W+AeIrdp++
  ORUFI02G21050.1 33 RYRGVRRRP-WGKWAAEIRDPRK 54
                     7********.**********954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-103357IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-63355IPR016177DNA-binding domain
PROSITE profilePS5103212.3783362IPR001471AP2/ERF domain
PfamPF008473.5E-53354IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MVGVVSAGDH AGGANVAEAA AAVVVAAPAT ARRYRGVRRR PWGKWAAEIR DPRKAARYLK  60
AV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078522e-77AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence.
GenBankAP0056112e-77AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0057712e-77AP005771.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0069D13.
GenBankAP0149582e-77AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-77CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878870.14e-29ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0NG755e-33A0A0E0NG75_ORYRU; Uncharacterized protein
STRINGORUFI02G21050.19e-34(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-07ERF family protein