PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G21290.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 665aa    MW: 70142.1 Da    PI: 10.1189
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G21290.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.4e-08168212244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W+ eEd  l  +v+++G g+W  I ++      Rt  q++ rw
  ORUFI02G21290.2 168 KPWSREEDMELGAGVQKHGEGNWMEILHKYKfdSSRTHLQLQQRW 212
                      68******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.555162220IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11162219IPR009057Homeodomain-like
SMARTSM007172.4E-6166218IPR001005SANT/Myb domain
PfamPF002493.2E-6168212IPR001005SANT/Myb domain
SuperFamilySSF466896.13E-13169228IPR009057Homeodomain-like
CDDcd116606.24E-18170217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MLQEMGKQVG AGKGIDWRAL VRRTSTGITS AREYQMLWRH LAYGHEFVES VEPASLPLDD  60
GSDLECEIEI VPAPGNEALA EATSFAKTII TGSSREQTSG QRVNSEAAAL NTPNEKIVRV  120
PSDKQLVPGH RLTNGTGPVS SSKQPSHTGS SPDPLDPNGH PKKKKKPKPW SREEDMELGA  180
GVQKHGEGNW MEILHKYKFD SSRTHLQLQQ RWALICKRQG STKPATPKIP NVMSEELKAA  240
QKAFSLAIGT TRSSTLRPGG VPHHNPMVTT TNPEVKSVTA PSPLPVPVHV VPVPVPVQPV  300
QVQLPPPQLH QAPAQSAPPP PKVSNASNKS RNNSKKQVAQ SIPVNGPLSI QEAALAAGGR  360
IAEPSVATNF LKAAQSTKAV HIRSRGTGSS KSSTGSKTPT VAGEPGTQLG SDQHLELQST  420
GGPSQVLTAH ATEQVHNVSE VAGVNPLGQS AGVHLSETKK ALNTTPVSGS SDKMEIDDNS  480
NYFAVTMEDL FPEDVKQEDV QDPKIEEAID PKDADMLEFD RFVAQGCLNK DNVDKSKAAK  540
IAPEAQSVIG SQKKQLKTLP TVGKSNPVFA GPPATAKKTK APVPQGGMSS GIVGVLNRSL  600
GGKAPAPATT GTQSTVQKQQ SMSSKGNLLV PKNVAPGTVT PANNRANTAV NGASKVNPPA  660
SQKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166PKKKKKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4289000.0AJ428900.1 Oryza sativa partial mRNA for putative Myb-family transcription factor (myb-L1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627404.10.0uncharacterized protein LOC4329631
TrEMBLQ6ZI390.0Q6ZI39_ORYSJ; Myb-family transcription factor-like protein
STRINGOS02T0551400-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-32MYB_related family protein