PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G26600.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 188aa    MW: 19107.5 Da    PI: 10.9431
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G26600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP28.26.2e-095477831
              TCP  8 hskihTkvggRdRRvRlsaecaar 31
                      +++h+kv+gR+RRvR+++ caar
  ORUFI02G26600.1 54 GKDRHSKVNGRGRRVRMPIVCAAR 77
                     5899999***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-75377IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSSRDAAATF HVYQPVQIPT ATVAPAAAVS AAPAEAVAQL VPAPSKKAAG AAGGKDRHSK  60
VNGRGRRVRM PIVCAARAEP SILAATGTGT TPAAFVSSSA PSTSSSHQHT LLGKRQRQES  120
AAADAVSVAG AASAFWAALP APGRPDAWGF SPLDAQPTYV PMAQAHHHHL NLLAALSGAA  180
RRAEEESR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00655PBMTransfer from LOC_Os02g42380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615680.0AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence.
GenBankAP0040670.0AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624938.12e-78transcription factor TCP7
SwissprotQ9FMX28e-18TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A0E0NI751e-128A0A0E0NI75_ORYRU; Uncharacterized protein
STRINGORUFI02G26600.11e-129(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.15e-08TCP family protein