PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G30560.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 507aa MW: 51853.6 Da PI: 6.1521

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G30560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.7e-31	240	298	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ ORUFI02G30560.1 240 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 298 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-31	234	300	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	234	300	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	237	300	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	239	299	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	241	298	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MCDYFLQRME GEQAAGDLAD IVLRAGGAAA AAVAGGGIPS TEWQLPPAEE EEEEPGLFPL 60 PPSSSDGSGM SGADAFGDPF AGLPDPFGGD YPSSSGGAAA AADFFDAVVA KAGFVDVGVL 120 GGGGGGGCDG GGVDGGGGGS SLLGMSKPIL PRAAMQLPSV SPRAIRPYPV MAGDTVKLGA 180 PMAGGPCAFD GAAAAGLHMS SSPRGAVGGI KRRKNQARKV VCIPAPAAAG GRTSGEVVPS 240 DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP 300 TQRNALAGST RSHHAKNSSS NSSSSGASSA SKNNSSHSGY HHHHHQKPLV KAEPNDQSAA 360 ATTAATVPVK EEAAMVGTSS EALAKTTQKS MEDAAAAASA TAAAVEHSDL MQQMFSQSYR 420 PMIPEAAAGG HHDDFFADLA ELESDPMSLI FSKEYMATNY KPAGDPAGKE MNAVDKGLDP 480 AYMLDWSSTT VVTRAGGSSF MQGEGGL

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MCDYFLQRME GEQAAGDLAD IVLRAGGAAA AAVAGGGIPS TEWQLPPAEE EEEEPGLFPL  60
PPSSSDGSGM SGADAFGDPF AGLPDPFGGD YPSSSGGAAA AADFFDAVVA KAGFVDVGVL  120
GGGGGGGCDG GGVDGGGGGS SLLGMSKPIL PRAAMQLPSV SPRAIRPYPV MAGDTVKLGA  180
PMAGGPCAFD GAAAAGLHMS SSPRGAVGGI KRRKNQARKV VCIPAPAAAG GRTSGEVVPS  240
DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS RTDPNMLVIT YTSEHNHPWP  300
TQRNALAGST RSHHAKNSSS NSSSSGASSA SKNNSSHSGY HHHHHQKPLV KAEPNDQSAA  360
ATTAATVPVK EEAAMVGTSS EALAKTTQKS MEDAAAAASA TAAAVEHSDL MQQMFSQSYR  420
PMIPEAAAGG HHDDFFADLA ELESDPMSLI FSKEYMATNY KPAGDPAGKE MNAVDKGLDP  480
AYMLDWSSTT VVTRAGGSSF MQGEGGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	214	301	2	80	Disease resistance protein RRS1
5w3x_D	4e-25	214	301	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073100	0.0	AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624748.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	1e-69	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0E0NJM9	0.0	A0A0E0NJM9_ORYRU; Uncharacterized protein
STRING	ORUFI02G30560.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	8e-67	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]