PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G31640.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 197aa MW: 22442.5 Da PI: 11.5887

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G31640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	48.9	1.9e-15	112	164	48	100
DUF260 48 alpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l ++ da+sslvyeA+ r+rdPvyG+vg i+ +q+q++ql+ +la+++ e ORUFI02G31640.1 112 ELLARQQGDAVSSLVYEANDRMRDPVYGCVGAISFMQNQVSQLQMQLAVAQGE 164 45667899****************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.4E-13	112	162	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAMRPKPAGR RRRLAKASRA EQRRAKPKGR IGWRRVERRR SKPKGRSSAA AGGEVAIRRR 60 SRSPQQRRVS FSHVVVAAAA ATWPVTDRHY REDWDDVQWV AVRVVQAAAA AELLARQQGD 120 AVSSLVYEAN DRMRDPVYGC VGAISFMQNQ VSQLQMQLAV AQGEILCIQM QHRDGNENKK 180 NVREEEERED GKKERRC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003983	1e-148	AP003983.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1038_A06.
GenBank	AP004165	1e-148	AP004165.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1479_B12.
GenBank	AP014958	1e-148	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624534.1	9e-57	LOB domain-containing protein 12
TrEMBL	A0A0E0NK14	1e-138	A0A0E0NK14_ORYRU; Uncharacterized protein
STRING	ORUFI02G31640.1	1e-139	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-26	LBD family protein