PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI02G32620.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 449aa MW: 49957.4 Da PI: 7.7416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI02G32620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.1e-08	197	229	19	55
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++e LrellP+ ++K +Ka+ L +++eYI+ Lq ORUFI02G32620.1 197 RLEILRELLPHT----DQKRDKASFLSEVIEYIRFLQ 229 5899*****8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.502	178	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-9	195	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-5	197	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.25E-7	197	233	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.1E-12	197	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLDLAKQRG 60 RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF 120 AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA FNSKTISYKY 180 MVQEMCSKMQ FFMLSFRLEI LRELLPHTDQ KRDKASFLSE VIEYIRFLQE KVQKYEEADP 240 ERNHEDSKSM PWAKVYYRSC WRNTKNTSQV QGEDLSPSTQ DMNNEQYGPK HISAAQPALF 300 NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESEPGNK MPNKHEKQTL 360 HDENHSISSA YSQGLFNRLT EALKKSGLDP SQANIAVEIN LAKRARDNTS DNSKIVCLII 420 ILYLCPDFTS QINEDEEPIQ ITKRRCNKS

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MQLFQGEEPA HDFLSLRAGG GSSSPPFQHR EEQHSSHSSR GYGMEIRRSL RPLDLAKQRG  60
RSSGNGTAAG SAVDGASPAG SDSEEHVLPG GVGTFSIRHA SGTPSREEAG SHGGVRRSAF  120
AFAPALHGAR MENAHETGGR SGSRAHRAPS TMWQDSAIDQ RSIGQTPYEA FNSKTISYKY  180
MVQEMCSKMQ FFMLSFRLEI LRELLPHTDQ KRDKASFLSE VIEYIRFLQE KVQKYEEADP  240
ERNHEDSKSM PWAKVYYRSC WRNTKNTSQV QGEDLSPSTQ DMNNEQYGPK HISAAQPALF  300
NTQSVTSTTT SSSHMATGTP QNLEKNSTPS NQPPWLSMST MRQESEPGNK MPNKHEKQTL  360
HDENHSISSA YSQGLFNRLT EALKKSGLDP SQANIAVEIN LAKRARDNTS DNSKIVCLII  420
ILYLCPDFTS QINEDEEPIQ ITKRRCNKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068228	0.0	AK068228.1 Oryza sativa Japonica Group cDNA clone:J013148L19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627558.1	0.0	transcription factor BIM2
Refseq	XP_015627559.1	0.0	transcription factor BIM2
Refseq	XP_015627560.1	0.0	transcription factor BIM2
TrEMBL	A0A0E0NKE0	0.0	A0A0E0NKE0_ORYRU; Uncharacterized protein
STRING	ORUFI02G32620.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP762	37	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.3	3e-22	bHLH family protein