PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G33610.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 800aa    MW: 87782.6 Da    PI: 7.981
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G33610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.68.8e-2354119171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      rk+ksL+ll+++f++l+++ + + + l+++a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  ORUFI02G33610.1  54 RKQKSLGLLCSNFVALYNRDDVESIGLDDAARRL---GV--ERRRIYDIVNVLESVGILVRKAKNRYSWIG 119
                      79*****************999************...**..****************************98 PP
2E2F_TDP74.51.1e-23199279171
          E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                      rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e     ++++k+RR+YDi+NVL++ln i+k     ++k+++rw g
  ORUFI02G33610.1 199 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEghaenSMRTKVRRLYDIANVLSSLNFIDKiqqadSRKPAFRWLG 279
                      79********************************************************************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-2550120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.69E-1653118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-2954119IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-2055119IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-21196280IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-30199279IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.3E-19200279IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.21E-11201279IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.40.50.9705.3E-131463790IPR029061Thiamin diphosphate-binding fold
SuperFamilySSF525189.91E-97469790IPR029061Thiamin diphosphate-binding fold
TIGRFAMsTIGR031821.4E-126478789IPR017597Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y
CDDcd020006.76E-140482772No hitNo description
PfamPF006764.3E-118485779IPR001017Dehydrogenase, E1 component
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006086Biological Processacetyl-CoA biosynthetic process from pyruvate
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005739Cellular Componentmitochondrion
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004739Molecular Functionpyruvate dehydrogenase (acetyl-transferring) activity
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MATAAVMAAV PSSSPADAAE AVVMTEAVPS LPQRQQPVFV EGRGGKLRDH AYSRKQKSLG  60
LLCSNFVALY NRDDVESIGL DDAARRLGVE RRRIYDIVNV LESVGILVRK AKNRYSWIGF  120
GGVPMALREL KERALREKSG LAPLPVEEPS AAIMSDDEDE DKMGDADGDT ESEKLSQPVD  180
NPSDNKPGAP RCRLRSDHRK EKSLGLLTQN FVKLFLTMEV DTISLDEAAK LLLGEGHAEN  240
SMRTKVRRLY DIANVLSSLN FIDKIQQADS RKPAFRWLGS AGKPKAENGV TIAVPPPGKT  300
ISNKRAFGTE LTNIDINRSR LDSTIPKKAK LTQSGGEILK NCKLSVQKQL GQGSKGGFVY  360
GPFHPAGARK QELDNGNKGH TDNVQNWESL AASFRPQYQN QALGDLFAHY VEAWKSWYSE  420
FAQGSSMMQQ HFGMPATALI ASRSISDSTA PLTIETSVPF TSHIVDPPSR DVTTTPAELL  480
TFFRDMSVMR RMEIAADSLY KAKLIRGFCH LYDGQEAVAV GMEAAITRSD SIITAYRDHC  540
TYLARGGDLV SAFAELMGRQ AGCSRGKGGS MHFYKKDANF YGGHGIVGAQ VPLGCGLAFA  600
QKYRKEETAT FALYGDGAAN QGQLFEALNI SALWKLPAIL VCENNHYGMG TAEWRAAKSP  660
AYYKRGDYVP GLKVDGMDVL AVKQACKFAK EHAIANGPIV LEMDTYRYHG HSMSDPGSTY  720
RTRDEISGVR QERDPIERVR KLILAHDLAT AAELKDMEKE IRKEVDDAIA KAKESPMPDT  780
SELFTNVYVK GFGVEVSSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ni4_A1e-11046778825344Pyruvate dehydrogenase E1 component: Alpha subunit
1ni4_C1e-11046778825344Pyruvate dehydrogenase E1 component: Alpha subunit
3exg_11e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_31e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_51e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_I1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_K1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_M1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_O1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_Q1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_S1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_U1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_W1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exg_Y1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exh_A1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exh_C1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exh_E1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
3exh_G1e-11046778842361Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
6cfo_A1e-11046778825344Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
6cfo_C1e-11046778825344Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115370.0AK111537.1 Oryza sativa Japonica Group cDNA clone:J013041C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626334.10.0E2F transcription factor-like E2FE
TrEMBLA0A0E0NKR50.0A0A0E0NKR5_ORYRU; Pyruvate dehydrogenase E1 component subunit alpha
STRINGORUFI02G33610.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-100DP-E2F-like 1