PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G34150.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 396aa    MW: 43196.6 Da    PI: 6.2899
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G34150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.78.9e-11213269155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ++GV++++++g+++A+++d  +   g +rk    g+++t+e+Aa+ ++ a++k++g
  ORUFI02G34150.1 213 SSFHGVTRHRWSGKYEAHLWDsSCRmEGrRRKGR-QGSYDTEEKAARSYDVAALKYWG 269
                      5799*****************7666766444554.4********************98 PP
2AP249.11.4e-15312363155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++ k+grW A+I  +        + ++lg+f t+eeAa+a++ a+ +++g
  ORUFI02G34150.1 312 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 363
                      57****************9995.....234************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-13213279IPR016177DNA-binding domain
CDDcd000183.68E-16213279No hitNo description
Gene3DG3DSA:3.30.730.101.5E-12214278IPR001471AP2/ERF domain
SMARTSM003801.3E-19214283IPR001471AP2/ERF domain
PROSITE profilePS5103217.346214277IPR001471AP2/ERF domain
PfamPF008471.3E-7214269IPR001471AP2/ERF domain
PRINTSPR003671.6E-5215226IPR001471AP2/ERF domain
CDDcd000188.93E-23312371No hitNo description
SuperFamilySSF541712.29E-17312373IPR016177DNA-binding domain
PfamPF008471.9E-9312363IPR001471AP2/ERF domain
PROSITE profilePS5103218.571313371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-19313372IPR001471AP2/ERF domain
SMARTSM003804.1E-28313377IPR001471AP2/ERF domain
PRINTSPR003671.6E-5353373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSCLGFFSSS SFGSSEEASG SFVPIDPFRP REMESSLKEE KAAGESGDDE KAQRSSPINL  60
NSLPATAACA ATAPDEDGLH SAVESGAKDS NTTKGVESLG TGHKKIPKRE VVDEVDVQTC  120
AEGKNDSVVP SSSKNPINDK NAKANVAENG QSADGIPEDQ RVTILSVVKK DEPADDVRDS  180
VNPVTVVGYR DEKGGTSGTA GTTAVRPAGT RSSSFHGVTR HRWSGKYEAH LWDSSCRMEG  240
RRRKGRQGSY DTEEKAARSY DVAALKYWGQ NTKLNFSVSE YERELEDIRD MSREECVTYL  300
RRRSSCFSRG ASIYRGVTRR QKDGRWQARI GLVAGTRDIY LGTFKTEEEA AEAYDIAAIE  360
IRGKNAVTNF DRSNYMEKGM HCIEGAGLKL LASKPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239246GRRRKGRQ
2300321RRRSSCFSRGASIYRGVTRRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402200.0FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626428.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626429.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
RefseqXP_015626430.10.0AP2-like ethylene-responsive transcription factor PLT1 isoform X1
TrEMBLA0A0E0NKY50.0A0A0E0NKY5_ORYRU; Uncharacterized protein
STRINGORUFI02G34150.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118882933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-68AINTEGUMENTA-like 5