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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | ORUFI02G34150.4 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | AP2 | ||||||||
| Protein Properties | Length: 160aa MW: 18175.4 Da PI: 8.0243 | ||||||||
| Description | AP2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | AP2 | 22.3 | 3.3e-07 | 7 | 33 | 29 | 55 |
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55
++++lg+++t+e+Aa+ ++ a++k++g
ORUFI02G34150.4 7 ASVYLGSYDTEEKAARSYDVAALKYWG 33
689**********************98 PP
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| 2 | AP2 | 51.3 | 3e-16 | 76 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV+++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g
ORUFI02G34150.4 76 SIYRGVTRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 127
57****************9995.....234*************************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51032 | 12.365 | 1 | 41 | IPR001471 | AP2/ERF domain |
| CDD | cd00018 | 2.82E-12 | 3 | 43 | No hit | No description |
| SMART | SM00380 | 3.6E-6 | 3 | 47 | IPR001471 | AP2/ERF domain |
| SuperFamily | SSF54171 | 1.5E-10 | 5 | 43 | IPR016177 | DNA-binding domain |
| Gene3D | G3DSA:3.30.730.10 | 2.0E-11 | 6 | 42 | IPR001471 | AP2/ERF domain |
| Pfam | PF00847 | 3.3E-4 | 7 | 33 | IPR001471 | AP2/ERF domain |
| SuperFamily | SSF54171 | 4.32E-18 | 76 | 137 | IPR016177 | DNA-binding domain |
| CDD | cd00018 | 9.15E-23 | 76 | 135 | No hit | No description |
| Pfam | PF00847 | 4.1E-10 | 76 | 127 | IPR001471 | AP2/ERF domain |
| SMART | SM00380 | 4.1E-28 | 77 | 141 | IPR001471 | AP2/ERF domain |
| PROSITE profile | PS51032 | 18.571 | 77 | 135 | IPR001471 | AP2/ERF domain |
| Gene3D | G3DSA:3.30.730.10 | 8.3E-20 | 77 | 136 | IPR001471 | AP2/ERF domain |
| PRINTS | PR00367 | 4.8E-6 | 78 | 89 | IPR001471 | AP2/ERF domain |
| PRINTS | PR00367 | 4.8E-6 | 117 | 137 | IPR001471 | AP2/ERF domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 160 aa Download sequence Send to blast |
MFPHGGASVY LGSYDTEEKA ARSYDVAALK YWGQNTKLNF SVSEYERELE DIRDMSREEC 60 VTYLRRRSSC FSRGASIYRG VTRRQKDGRW QARIGLVAGT RDIYLGTFKT EEEAAEAYDI 120 AAIEIRGKNA VTNFDRSNYM EKGMHCIEGA GLKLLASKPE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 64 | 85 | RRRSSCFSRGASIYRGVTRRQK |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
| UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK242387 | 0.0 | AK242387.1 Oryza sativa Japonica Group cDNA, clone: J080051E14, full insert sequence. | |||
| GenBank | AY685114 | 0.0 | AY685114.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D8 (AP2D8) mRNA, complete cds. | |||
| GenBank | FJ940220 | 0.0 | FJ940220.1 Oryza sativa Japonica Group clone KCS100F03 AP2D8 transcription factor mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015626428.1 | 1e-108 | AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
| Refseq | XP_015626429.1 | 1e-108 | AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
| Refseq | XP_015626430.1 | 1e-108 | AP2-like ethylene-responsive transcription factor PLT1 isoform X1 | ||||
| Swissprot | Q1PFE1 | 2e-60 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
| Swissprot | Q6PQQ4 | 7e-59 | BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM | ||||
| TrEMBL | A0A0E0CRH4 | 1e-114 | A0A0E0CRH4_9ORYZ; Uncharacterized protein | ||||
| TrEMBL | A0A0E0NKY8 | 1e-114 | A0A0E0NKY8_ORYRU; Uncharacterized protein | ||||
| STRING | OS02T0747600-01 | 1e-107 | (Oryza sativa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37750.1 | 1e-51 | AP2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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