PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI02G34160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 259aa    MW: 27870.5 Da    PI: 11.4376
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI02G34160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP752.2e-23331375120
              TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..kaaksaa 95 
                       d+hsk+ T++g+RdRR+Rls+++ + f+d+qd+LG+ ++sk ieWL+ +a  a   l   +  +a +   ++s + s+++ + +    a s  
  ORUFI02G34160.1  33 GDKHSKVVTSRGLRDRRIRLSVPTSIAFYDIQDRLGVNRPSKSIEWLICAALVARLLLRPPQRRPAPHPrRPSSGQPSEEQARTRkaTVAVSPG 126
                      59*************************************************9999999998777773332222222222222221111112222 PP

              TCP  96 kskksqksaasalnlakesrakara 120
                      ks               e+r k r+
  ORUFI02G34160.1 127 KSG--------------EKRRKTRS 137
                      222..............22222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136925.2443290IPR017887Transcription factor TCP subgroup
PfamPF036343.8E-213483IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEEVVVGKER KRPRCALVGV GGHDSDVADE PGGDKHSKVV TSRGLRDRRI RLSVPTSIAF  60
YDIQDRLGVN RPSKSIEWLI CAALVARLLL RPPQRRPAPH PRRPSSGQPS EEQARTRKAT  120
VAVSPGKSGE KRRKTRSGCA ARKAERITKF RGVRRGAHRE VEGAEGGVDA EARGEHLGDV  180
GRPELDQEAV DARERRLVLV LRCEAGEAAV GGEGRGGGGA GSRWRGAGWW RTTTMTMMAA  240
RARSSSPAAA NAAQIGVGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-153780144Putative transcription factor PCF6
5zkt_B5e-153780144Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057330.0AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBankAP0058480.0AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0NKY90.0A0A0E0NKY9_ORYRU; Uncharacterized protein
STRINGORUFI02G34160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1996588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-20TCP family protein