PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G01160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 200aa    MW: 20870.1 Da    PI: 4.9037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G01160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-172474156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     + y+G+r +  +g+Wv+eIr+p   gk+ r++lg++ t+e+Aa+a++aa+++l+g+
  ORUFI03G01160.1 24 PVYRGIRLR--SGKWVSEIREP---GKSSRIWLGTYPTPEMAAAAYDAAALALRGA 74
                     68****986..5*********8...557*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-112473IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-182581IPR016177DNA-binding domain
PROSITE profilePS5103220.1262581IPR001471AP2/ERF domain
SMARTSM003803.4E-272587IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-272581IPR001471AP2/ERF domain
PRINTSPR003671.3E-62637IPR001471AP2/ERF domain
CDDcd000182.78E-152681No hitNo description
PRINTSPR003671.3E-66383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDRDESLGTQ PLTGRRVRAD TRHPVYRGIR LRSGKWVSEI REPGKSSRIW LGTYPTPEMA  60
AAAYDAAALA LRGADAALNF PGTATSRPAP ASGSPDDIRA AAAAAAAMIG SGHRGNQRAA  120
DASTSRAATA APEAAVAAGA GDQKRVVDED DVFEMPRLLV SMAEGLMMSP PRLSPSTDGV  180
GGVSPEDDED EDGMSLWNHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1342360.0AC134236.4 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0056G13, complete sequence.
GenBankAK1089300.0AK108930.1 Oryza sativa Japonica Group cDNA clone:002-153-A05, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880266.11e-139ethylene-responsive transcription factor ERF027
RefseqXP_025880267.11e-139ethylene-responsive transcription factor ERF027
TrEMBLA0A0E0NNU61e-138A0A0E0NNU6_ORYRU; Uncharacterized protein
TrEMBLQ10SM11e-138Q10SM1_ORYSJ; AP2 domain containing protein, expressed
STRINGORUFI03G01160.11e-139(Oryza rufipogon)
STRINGOS03T0117900-011e-139(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-30ERF family protein