PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G04510.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 131aa    MW: 14305.3 Da    PI: 8.6491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G04510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.3e-11521281895
                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
               B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                      ++ ++++++ g++  +  ++ +  + +s++++l  ++++++  +lt+GW++  +a+  +egD+++F++++  +   l+v+
  ORUFI03G04510.1  52 FSERYINKYIGSP-IDDLMVSMAGTTQSYQMRL--KRSKDSsAMLTTGWNQLIDAKAFDEGDVCLFHFKEVdDVLVLKVH 128
                      4444444443333.3333444456779999999..55555459************************9876566655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-1041130IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-950126IPR003340B3 DNA binding domain
CDDcd100173.31E-850131No hitNo description
SuperFamilySSF1019361.04E-862125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.92477131IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEGGQAVLGT AGASAARRCG RLHGCRRARG GTASSEQCSV PTRVAETFAV QFSERYINKY  60
IGSPIDDLMV SMAGTTQSYQ MRLKRSKDSS AMLTTGWNQL IDAKAFDEGD VCLFHFKEVD  120
DVLVLKVHVL K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044281e-141AC104428.2 Oryza sativa Japonica Group chromosome 3 clone OJ1123F12, complete sequence.
GenBankAP0149591e-141AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-141CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB7EIH28e-59Y3643_ORYSJ; B3 domain-containing protein Os03g0164300
TrEMBLA0A0E0NQ335e-93A0A0E0NQ33_ORYRU; Uncharacterized protein
STRINGORUFI03G04510.18e-94(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1902055
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]