PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G05880.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 354aa    MW: 39036.3 Da    PI: 5.6219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G05880.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-19148198155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +gr++AeIrdp++    +r++lg++g+aeeAa a+++ +++++g
  ORUFI03G05880.2 148 SKYRGVRRRP-SGRFAAEIRDPKK---GRRVWLGTYGSAEEAAMAYDREARRIRG 198
                      89********.7*********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.33E-28148206No hitNo description
SuperFamilySSF541719.81E-21148207IPR016177DNA-binding domain
PfamPF008471.7E-12148198IPR001471AP2/ERF domain
PROSITE profilePS5103221.97149206IPR001471AP2/ERF domain
SMARTSM003802.0E-32149212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-28149206IPR001471AP2/ERF domain
PRINTSPR003672.2E-7150161IPR001471AP2/ERF domain
PRINTSPR003672.2E-7172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MQFVHSIPIP TSASDGDADA DDFSSIYHSP ASRHSDVSPG ERRARRAMCG GAILADFTPA  60
RVPRRLTAAE LLPVTPTPPA AERRTTRKRK SDVDFEAEFE LFEDDDDDDE FELSDDGDEI  120
SSDVSSSSRP RRRVAAAAAG RRKASKKSKY RGVRRRPSGR FAAEIRDPKK GRRVWLGTYG  180
SAEEAAMAYD REARRIRGKG ARLNFPRDGD GSPRRSNDRP CWTIDLNLPA AAVSGDDDDA  240
MAVDAADADA GSAGRAAAYA DQEALSAAKC KIKQCPRDEQ MASATPELME EDASSSRNMV  300
PLSMALQLQY AAMIAECDRE MEEIAAVERD LERRRRQVFE RRGHLVRQAS LLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19145206163ATERF1
3gcc_A3e-19145206163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590TRKRKS
2141156RKASKKSKYRGVRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0731330.0AK073133.1 Oryza sativa Japonica Group cDNA clone:J033023E13, full insert sequence.
GenBankAY3234780.0AY323478.1 Oryza sativa (japonica cultivar-group) ap2 domain containing protein (cap2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632275.11e-154ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0E0NQL60.0A0A0E0NQL6_ORYRU; Uncharacterized protein
STRINGORUFI03G05880.11e-170(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-24ERF family protein