PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI03G06720.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 74aa MW: 7902 Da PI: 9.3793

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI03G06720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	38.7	3.7e-12	31	74	2	45
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkds 45 a +k ++++ h kv+ + R+R+ + aa +F+L +eLG+++d+ ORUFI03G06720.1 31 AIRKPPSKDCHNKVDALGCRIRMHIIYAAHIFQLNRELGHKSDG 74 689***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	8.938	37	74	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.8E-7	37	74	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MTKVHGDGGG GAALDKQLVP NASNDNGTAL AIRKPPSKDC HNKVDALGCR IRMHIIYAAH 60 IFQLNRELGH KSDG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210480	1e-97	AC210480.2 Oryza glaberrima clone OG_BBa0067M08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629543.1	4e-25	transcription factor TCP21
Swissprot	Q9FTA2	5e-15	TCP21_ARATH; Transcription factor TCP21
TrEMBL	A0A0E0NQX0	2e-47	A0A0E0NQX0_ORYRU; Uncharacterized protein
STRING	ORUFI03G06720.1	4e-48	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP38180	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-17	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]