PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G10270.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 117aa    MW: 12606.3 Da    PI: 11.6857
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G10270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like44.14.4e-1481113133
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktil 33 
                      k+r++W+peLH+rFv  +++L G++ AtPk+i+
  ORUFI03G10270.1  81 KARRCWSPELHRRFVATLQRLDGPQAATPKQIR 113
                      68*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-1079113IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-1081114IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MSISNHHVSN AFMPLATSPV FAKSPEKAAT ATPLPAAVPD LSLSSPACPA APASVTSSAV  60
TDVARVQRRR QQQQQQAVQR KARRCWSPEL HRRFVATLQR LDGPQAATPK QIRADEG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1361361e-177AC136136.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0071C04, from chromosome 3, complete sequence.
GenBankAP0149591e-177AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618787.12e-35transcription factor HHO6
RefseqXP_025879396.12e-36LOW QUALITY PROTEIN: transcription factor HHO2-like
TrEMBLA0A0E0NS902e-77A0A0E0NS90_ORYRU; Uncharacterized protein
STRINGORUFI03G10270.14e-78(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-10G2-like family protein