PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G19200.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 531aa    MW: 58812.8 Da    PI: 9.6585
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G19200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.21.7e-302563492103
                      HHHHHHHHHC.TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeile.deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k++      +++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll
  ORUFI03G19200.1 256 FLSKTWWTTPaPPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLL 340
                      666665444326799***************************************************999.........**************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  95 ekikrkkse 103
                      ++i+r+ks+
  ORUFI03G19200.1 341 SEIHRRKSS 349
                      ******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF502493.0E-1125136IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1404.6E-728136IPR012340Nucleic acid-binding, OB-fold
CDDcd044831.73E-2940124No hitNo description
PfamPF013367.9E-841130IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
SMARTSM004153.0E-47252346IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-31253346IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.3E-27253346IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-27256346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-12257280IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-12295307IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340296320IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-12308320IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDSLHLVHVK LLAADLLSLA SRHTSPPSFA RCGRTVTRAE IVGVVVSRDR REKFLRFLVD  60
DGTGCVPCVL WLNHHYLNAA SSSSRASDSD PTAEMALRMS EVVSLGTLLR VRGRIVLYRG  120
AIQIAVRDVV LEKDPNVEDQ AELGEEKIWA TALSASKNWA RYGKSLGPNE GTRGIYQYTL  180
DLSFFPDCIA RIYARGQKIR SENSSGLHDG IHIWTEARSM AFLVERCGGE MVVSMERSHG  240
RSTTTAAAVT AAPAPFLSKT WWTTPAPPST DDVVSWGEDE ATFVVWRPPE FARDLLPNYF  300
KHNNFSSFVR QLNTYGFRKI VADRWEFANE FFRKGAKHLL SEIHRRKSSS CSQPQPPPPF  360
PMHQHYPLSL FSPPTTPRSP PVGAAAAAAY HFQEEYCSSP ADYAGGGGDL LAALSEDNRQ  420
LRRRNSLLLS ELAHMRKLYN DIIYFLQNHV EPVAPPLLAA ATSCRLGGLG PARRRPNAAV  480
APPRRPVTTT TTRRCGCSAS GWTTTMARRG GCSWCRKTKE TSREARGSLA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B8e-202533503109Heat shock factor protein 2
5d8l_B8e-202533503109Heat shock factor protein 2
5d8l_D8e-202533503109Heat shock factor protein 2
5d8l_F8e-202533503109Heat shock factor protein 2
5d8l_H8e-202533503109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257840.0AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.11e-132heat stress transcription factor B-4d
RefseqXP_025880033.11e-132heat stress transcription factor B-4d
RefseqXP_025880034.11e-132heat stress transcription factor B-4d
RefseqXP_025880035.11e-132heat stress transcription factor B-4d
RefseqXP_025880036.11e-132heat stress transcription factor B-4d
SwissprotQ10KX81e-133HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0E0NVH50.0A0A0E0NVH5_ORYRU; Uncharacterized protein
STRINGORUFI03G19200.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP622822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.14e-58heat shock transcription factor B4