PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G21770.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 278aa    MW: 29318 Da    PI: 4.6765
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G21770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-0914411947
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47
                     + ++tW++Ia +++ gRt++++k++w++ 
  ORUFI03G21770.1 14 HKPNTWSLIAGRLP-GRTDNEIKNYWNST 41
                     55669*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.213146IPR017930Myb domain
SuperFamilySSF466891.14E-71248IPR009057Homeodomain-like
CDDcd001672.38E-61442No hitNo description
Gene3DG3DSA:1.10.10.608.9E-121442IPR009057Homeodomain-like
PfamPF002498.3E-71641IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MKSQVRLAQD TPGHKPNTWS LIAGRLPGRT DNEIKNYWNS TLSKRVAMQR TAAATSMPAA  60
ATTSSNADAA GAAARRRRSP EPRTVVVSPI RTKALRCNNN SSSGIVVVQQ AGACSHGGRP  120
PESGAPGDAA ADKVATPQAV QQQQQQELAG AEDDDDLPVP AVCIDLDLDD IELGGLDGFL  180
ISPWRGGGHD DGNAAAGAVP NLPMPIGYEL GGAGGGGEAG AVDLEALLGQ LEAEEDDDGD  240
HHHHHHHHHH HHQQQEEEVP SSLGDEDDDY LEFAPWLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1134330.0AC113433.8 Oryza sativa chromosome 3 BAC OSJNBb0108E08 genomic sequence, complete sequence.
GenBankAK1106830.0AK110683.1 Oryza sativa Japonica Group cDNA clone:002-169-H06, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629423.11e-166anthocyanin regulatory C1 protein
TrEMBLA0A0E0NWE90.0A0A0E0NWE9_ORYRU; Uncharacterized protein
STRINGORUFI03G21770.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2000155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-11MYB family protein