PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G37130.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 205aa    MW: 23161.5 Da    PI: 8.2207
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G37130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-071211502655
                      -HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  26 saeereeLAkklgLterqVkvWFqNrRake 55 
                      ++ e+  LA+ +gL+++q+++WF N+R ++
  ORUFI03G37130.1 121 QEMEKMTLAQTTGLDQKQISNWFINQRKRH 150
                      5668889********************885 PP
2ELK27.95.2e-103152122
              ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                     +LKhqLl KY+g+Lg+L+q Fs
  ORUFI03G37130.1 31 QLKHQLLMKYGGSLGDLRQAFS 52
                     59*****************776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.0973151IPR005539ELK domain
PfamPF037891.7E-93152IPR005539ELK domain
SMARTSM011884.7E-53152IPR005539ELK domain
SMARTSM003890.003353157IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-225683IPR009057Homeodomain-like
PROSITE profilePS5007110.122119153IPR001356Homeobox domain
SuperFamilySSF466898.98E-10119160IPR009057Homeodomain-like
PfamPF059202.7E-10122149IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.603.4E-22122154IPR009057Homeodomain-like
CDDcd000868.95E-8124153No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDSNCEGTGS SEEEQDTSCP EAEEIDPSDK QLKHQLLMKY GGSLGDLRQA FSKRTKKGKL  60
PKEARLKLLH WWELHYDKWP YPSVRTHIYA SHLINSTTFF CTKLDLMKMR ELIGCTCVYE  120
QEMEKMTLAQ TTGLDQKQIS NWFINQRKRH WKPTPVAGMT FPTVEAAGGG FRHSGHGGGL  180
AAAAALPLYM GSWPFVVDGM YRLGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0927810.0AC092781.6 Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879690.11e-107homeobox protein knotted-1-like 9
SwissprotQ10EC61e-108KNOS9_ORYSJ; Homeobox protein knotted-1-like 9
TrEMBLA0A0E0P1V71e-153A0A0E0P1V7_ORYRU; Uncharacterized protein
STRINGORUFI03G37130.11e-154(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147561321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.19e-31KNOTTED-like from Arabidopsis thaliana