PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G40640.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 415aa    MW: 45300.6 Da    PI: 8.0367
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G40640.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.52.8e-07117138122
              AP2   1 sgykGVrwdkkrgrWvAeIrdp 22 
                      s+y+GV++++++grW+++I+ +
  ORUFI03G40640.2 117 SQYRGVTFYRRTGRWESHIWAY 138
                      78*****************984 PP
2AP242.12.1e-13190240155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ +++g
  ORUFI03G40640.2 190 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 240
                      79********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-5117156IPR016177DNA-binding domain
SMARTSM003806.1E-7118161IPR001471AP2/ERF domain
PfamPF008471.1E-8190240IPR001471AP2/ERF domain
CDDcd000184.42E-26190250No hitNo description
SuperFamilySSF541719.81E-17190248IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-16191248IPR001471AP2/ERF domain
PROSITE profilePS5103216.041191248IPR001471AP2/ERF domain
SMARTSM003806.7E-33191254IPR001471AP2/ERF domain
PRINTSPR003678.9E-6192203IPR001471AP2/ERF domain
PRINTSPR003678.9E-6230250IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MLLDLNVESP ERSGTSSSSV LNSGDAGGGG GGGGGGGLFR FDLLASSPDD DECSGEQHQL  60
PAASGIVTRQ LLPPPPPAAP SPAPAWQPPR RAAEDAALAQ RPVVAKKTRR GPRSRSSQYR  120
GVTFYRRTGR WESHIWAYDR AAIKFRGLEA DINFNLSDYE DDLKQMRNWS KEEFVHILRR  180
QSTGFARGSS KFRGVTLHKC GRWEARMGQL LGKKYIYLGL FDTEVEAARA YDRAAIRFNG  240
REAVTNFEPA SYNVDALPDA GNEAIVDGDL DLDLRISQPN ARDSKSDVAT TGLQLTCDSP  300
ESSNITVHQP MGSSPQWTVH HQSTPLPPQH QRLYPSHCLG FLPNLQERPM DRRPELGPMP  360
FPTQAWQMQA PSHLPLLHAA ASSGFSAGAG AGVAAATRRQ PPFPADHPFY FPPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851130.0AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628369.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotQ84TB50.0AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0E0P3500.0A0A0E0P350_ORYRU; Uncharacterized protein
STRINGOBART03G38950.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-76related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]