PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G41410.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 216aa    MW: 24068.7 Da    PI: 9.9418
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G41410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.91.2e-2091551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....sg 81 
                      l pG+ FhP+d+ l++ +L++++++ ++e  + i+++d+y+++P +L         ++++++ wyfF++ + +++  t+ r++ra++     ++
  ORUFI03G41410.1   9 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSADPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVAgggggES 101
                      579************************998.88**************7335666655557779*****97654441155566675443554467 PP

              NAM  82 yWkatgkdkevlskkgelvglkktLvfy.......kgrapkgektdWvmheyrl 128
                      +Wk+ g +k+v+ ++g+ vg  + + +        +g+a++ ++  W+m ey l
  ORUFI03G41410.1 102 VWKSEGGKKAVIGADGRRVGYLQKFSYGvyessssSGSARTFTRLGWCMTEYGL 155
                      8********************999999655776666788888899*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-307162IPR003441NAC domain
PROSITE profilePS5100524.3689177IPR003441NAC domain
PfamPF023651.2E-1211154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MADDDEIALE PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAD PAELVGEHRP  60
APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RAVAGGGGGE SVWKSEGGKK AVIGADGRRV  120
GYLQKFSYGV YESSSSSGSA RTFTRLGWCM TEYGLDDDAX SHCRGLRRWR LPAAETNSSR  180
RRTDLAWTKR RSSRGWLPEK SSTTFLARTL MKQVFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0966870.0AC096687.5 Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629669.11e-104NAC domain-containing protein 71-like
RefseqXP_015629670.11e-104NAC domain-containing protein 71-like
TrEMBLA0A0E0P3F51e-156A0A0E0P3F5_ORYRU; Uncharacterized protein
STRINGORUFI03G41410.11e-157(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.11e-09NAC domain containing protein 80