PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G41790.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 150aa    MW: 16858.1 Da    PI: 6.116
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G41790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-172569246
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     ri++ + rqvt  k rn +lKKA+EL  LCdae+ +iifss+g+l
  ORUFI03G41790.1 25 RIKSMTSRQVTSGKHRNDLLKKAYELALLCDAEIGLIIFSSRGRL 69
                     89*****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-151675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.8571676IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-171838IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-171976IPR002100Transcription factor, MADS-box
PfamPF003196.2E-162569IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-173853IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-175374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MENERPQNYI GSGHPEGDRL IDIGRIKSMT SRQVTSGKHR NDLLKKAYEL ALLCDAEIGL  60
IIFSSRGRLC CIATDKLLSS SPVLQIPERT NNKTMLGDDS DHMAMFEKKA SVTQTDMKEK  120
RGKAKDVSID EDKSSDDDVD MQLAPLHTWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0925571e-83AC092557.7 Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence.
GenBankAP0149591e-83AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-83CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P3K11e-107A0A0E0P3K1_ORYRU; Uncharacterized protein
STRINGORUFI03G41790.11e-108(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.22e-18MIKC_MADS family protein