PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G42160.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 1675aa    MW: 186757 Da    PI: 5.8195
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G42160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-0815231564144
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding    1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44  
                       r +W++ E ++++++ +q+G++ ++ I + ++  ++++q++ ++
  ORUFI03G42160.1 1523 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 1564
                       569*******************.*********.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.454939IPR002885Pentatricopeptide repeat
PfamPF015350.0191439IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.3644074IPR002885Pentatricopeptide repeat
PfamPF015350.0424271IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.89575109IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.881110140IPR002885Pentatricopeptide repeat
PfamPF015350.002115141IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.723141175IPR002885Pentatricopeptide repeat
PfamPF015350.027144172IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.149176211IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.607212242IPR002885Pentatricopeptide repeat
PfamPF015350.022217239IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.977243283IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.941319349IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.9E-8348385IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.353350380IPR002885Pentatricopeptide repeat
PfamPF015357.4E-4353377IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.0E-4353377IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.415385419IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.9E-8423482IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS5137510.512451485IPR002885Pentatricopeptide repeat
PfamPF015356.3E-6453483IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0024453486IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.031486521IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.108.9E-8552609IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513755.744554584IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.53588622IPR002885Pentatricopeptide repeat
PfamPF144326.2E-13625747IPR032867DYW domain
SuperFamilySSF466898.97E-1015141570IPR009057Homeodomain-like
PfamPF159638.3E-2515161597No hitNo description
SMARTSM007177.5E-915221570IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-515231565IPR009057Homeodomain-like
CDDcd001672.67E-615251565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1675 aa     Download sequence    Send to blast
MLRAAYRPGL FLRNNLLALY CRCGDMRHAR LLFDGMPRRD AVSWNTLIAG YSGLGSCRLA  60
LDAFRDARAS GDGVDRFTFA AALASCARVG DWRDGRVVHG LAVVSGLART AFLTNSVIDM  120
YAKCGMIDEV RLLFDRAEER GEASWNLLLS AYVRMGWPEV AVNVLVWMHR SGVKLDSFAL  180
GGILKACSEL GDSEDVRRML HSCVVKVGLD LDVFVGSAMV DMYAKNGGLE EAIKVFDCIP  240
NQNVVVYNAM IAGFARLGND PCPEIRIEAV TLFSNMLKKR IKPSKFTFKS VLEVCNLTNA  300
VRCGRQIHAH VILSGLQGDE FIASVLINLY SKARCVNDSL RCFDMTVKED VFIWTSMITA  360
FVQNEHFEKA LYLFRELLYT RKGTDQFTIS SVMSACAALS VPTTCKQIHC HAVKTGLDQF  420
TVSGNSQIAM YRNIGDLKAS KQTFEQISCL DTFSWSAMIL SYAVHGYESK ALELFEKMKN  480
LGVMMNESAS LAALIACSHQ GLGDEGLRYY ENTIPDDGFS LDVKLKACMV DLLGRVGKIA  540
DAEDFIMSSG SENDPILWHA LLRACRVHGD KERCTKIGEK LMELEPFSAS SYVMLYNLYM  600
DAGKISLAMR TRGLMRERGI SNEAGISWTD FGGSIHNFID GDNSCSHNTI HTTLEELLVR  660
VKQKTEHGGT NIWELEFQSR KLSESSISRH GELLAVAFGL TTLPSVAPVR VMKNQRISWE  720
SHETLKLLSE GENREITVRD PTHFHHFTRG SCSCRGYCLW LCFMPRRRRR SIAVPTSKVN  780
RLRVPRAATD PRTPRPYQRT SGHIAMIDDE ADFGNITDAT EGQAAAKFRP KARAKPRKTS  840
LPSRSLAPHP TVESTDENVE TLNKDSTSQE QSVDKKAASL GCHGSETDGN ACASGGILDT  900
PSEDVVTVSL GLVNNPDVAL DSSTVFASSA HKVSQNEENN DDVSHVATHK ENMVVSDTQA  960
PPTCCSARTI DDLADFEGLC DDTHVEEERV AKFQPKFRVK TSKAASKSQR TNQKAGVSTV  1020
DVLSQNKEDG KDQAGCNDKQ LHSPTRHQES VQISYSQAHL GTHNSTIDDV ANSDSIMEEP  1080
AQEEMAAKFQ PRLRPKAGGA SPGVAETIDA ACVATPEFGV SSVDVVSQDT EEDSHREGLS  1140
DDSCQKYIDE EAITTSGTGP PQDLDDTVDL DSHAEMVNPH PDGSPLIIEE LSAGTTVKFQ  1200
PYVRRKKGKG KSVSFVPPNV SHAHAPTDTN FETSNSSHFC KDIATGESLS NLPQQASEKI  1260
CISGEHHPDD QECNDPENQY HEGEPYDHVI EQEPERDARE TGTSMKLRNR RKLQKDGIPE  1320
HTADDIMDED FGEPPSDEQD NDSGDEYTAR GKQKGRRKSR EKNINKEPSR GTKRTSGDST  1380
IEESQKQKLQ KNKSKASSGG QKKTSKDSSV EQPEKKLTHR IRRKRMEEVK TLLETPDHEI  1440
DRMKLSVTHL RLLQEAKERI KASFVGKEIP SGPSSSNHST SQFGDMDDEY NEQDNWDNDR  1500
TENHVVENTT KLNYHSYMNR QTRAKWSKSE TDKFYEGLQQ FGSDFAMIQH LFPDKSRNQV  1560
RQKFKAEEKK HPMQVHDAIM HRSRDNLYFK EVIKKLNIED VQPDINNTHE QEGTSNEEDP  1620
GNKNIPGGLI NEEEENGLDW SDKELDMHRS EVEEKEHVST NDDDDDDLGD VFDWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-63158313337PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633004.10.0uncharacterized protein LOC9267825
TrEMBLA0A0E0P3P50.0A0A0E0P3P5_ORYRU; Uncharacterized protein
STRINGORUFI03G42160.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-34MYB_related family protein