PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G42200.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 267aa    MW: 28839 Da    PI: 4.6645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G42200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.25.7e-1881181103
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat..gkrknr.atksgyWka 85 
                      l pG+ F+P+d+ l++ +L++k+++ ++e  + i+++d+y+++P +L         ++++ + wyfF++ + ++++  + r++r +  +++Wk+
  ORUFI03G42200.1   8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHADVYSADPTELVGehrpapGTHGSGSVWYFFCSPRYTSKRkaSGRRQRaVGGESVWKS 100
                      579************************999.89**************733567665556778******97655543113355552667999*** PP

              NAM  86 tgkdkevlskkgelvglk 103
                       g +k+v+ ++g+ v +k
  ORUFI03G42200.1 101 EGGKKAVIGADGRRVLCK 118
                      ********9999888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-226118IPR003441NAC domain
PROSITE profilePS5100518.5528163IPR003441NAC domain
PfamPF023654.5E-910109IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHADVYSADP TELVGEHRPA  60
PGTHGSGSVW YFFCSPRYTS KRKASGRRQR AVGGESVWKS EGGKKAVIGA DGRRVLCKVY  120
RSPRAVCAEA RTAAAKCSGS KRKADDGVDH PEAPPPSARP RQEEAGSEHD EQSSELLPEL  180
DLDALLSAPM DENLESTFST AATEQYMRYL LNDEPLPWAP TTELVDGGGG GGDEFIQTAN  240
GPCMDGEVFT RLAAGETLDD ILGSTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0968560.0AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.11e-165NAC transcription factor NAM-2
TrEMBLA0A0E0P3Q30.0A0A0E0P3Q3_ORYRU; Uncharacterized protein
STRINGORUFI03G42200.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-13NAC family protein