PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI03G43230.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 501aa    MW: 54635.5 Da    PI: 4.6391
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI03G43230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind49.21.5e-15381242102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+ye+++d++++ ++sw   +nsfvv+++ efa+++Lp+     +   +       gF+kv+ ++         weF+++ F +g+k+ll+
  ORUFI03G43230.1  38 FLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPNQKYLYRADTL-----CHGFRKVDPDR---------WEFANEGFLRGQKHLLK 117
                      9*********************99****************985444444444.....68******999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  ORUFI03G43230.1 118 TINRRKP 124
                      *****86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.44E-2033122IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-3234122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-1935122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-1338122IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEAAVAAAAA AAGAVTTAVA PPPGAAVSNG VATAPPPFLM KTYEMVDDPA TDAVVSWGPG  60
NNSFVVWNTP EFARDLLPNQ KYLYRADTLC HGFRKVDPDR WEFANEGFLR GQKHLLKTIN  120
RRKPTHGNNQ VQQPQLPAAP VPACVEVGKF GMEEEIEMLK RDKNVLMQEL VRLRQQQQTT  180
DHQLQTLGKR LQGMEQRQQQ MMSFLAKAMH SPGFLAQFVQ QNENSRRRIV ASNKKRRLPK  240
QDGSLDSESA SLDGQIVKYQ PMINEAAKAM LRKILKLDSS HRFESMGNSD NFLLENYMPN  300
GQGLDSSSST RNSGVTLAEV PANSGLPYVA TSSGLSAICS TSTPQIQCPV VLDNGIPKEV  360
PNMSAVPSVP KAVAPGPTDI NILEFPDLQD IVAEENVDIP GGGFEMPGPE GVFSLPEEGD  420
DSVPIETDEI LYNDDTQKLP AIIDSFWEQF LVASPLSVDN DEVDSGVLDQ KETQQGNGWT  480
KAENMANLTE QMGLLSSHHT G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-132312218129Heat shock factor protein 1
5d5v_B9e-132312218129Heat shock factor protein 1
5d5v_D9e-132312218129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1205060.0AC120506.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0006O08 map S15179S, complete sequence.
GenBankAK1004300.0AK100430.1 Oryza sativa Japonica Group cDNA clone:J023088F14, full insert sequence.
GenBankAK1061180.0AK106118.1 Oryza sativa Japonica Group cDNA clone:001-207-E07, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAY3444850.0AY344485.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF3 mRNA, complete cds.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankEU8469830.0EU846983.1 Oryza sativa Japonica Group clone KCS225D11 heat shock factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630421.10.0heat stress transcription factor A-1
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0E0P4310.0A0A0E0P431_ORYRU; Uncharacterized protein
STRINGORUFI03G43230.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-105heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]