PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI04G03370.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 86aa MW: 9803.88 Da PI: 10.5943

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G03370.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	23.4	1.2e-07	40	64	14	38
TCR 14 lkkYCeCfaagkkCseeCkCedCkN 38 l + CeC ++++ C+ +C+C +C N ORUFI04G03370.2 40 LELVCECLKHEVRCTAKCRCIECGN 64 6678*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03638	1.1E-5	38	64	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MGHARLHFLL FLVSASADCL LRPPLRLRRT SAPLRMSKRL ELVCECLKHE VRCTAKCRCI 60 ECGNGLGIKR GIENEKRAMV MRLNVI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	7e-41	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0P5E3	1e-53	A0A0E0P5E3_ORYRU; Uncharacterized protein
STRING	ORUFI04G03370.2	2e-54	(Oryza rufipogon)