PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G03370.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 75aa    MW: 8408.2 Da    PI: 9.8334
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G03370.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.88.9e-0840641438
              TCR 14 lkkYCeCfaagkkCseeCkCedCkN 38
                     l + CeC ++++ C+ +C+C +C N
  ORUFI04G03370.3 40 LELVCECLKHEVRCTAKCRCIECGN 64
                     6778*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036387.9E-63864IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MGHARLHFLL FLVSASADCL LRPPLRLRRT SAPLRMSKRL ELVCECLKHE VRCTAKCRCI  60
ECGNGLGIKR GIVSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126126e-41CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P5E44e-45A0A0E0P5E4_ORYRU; Uncharacterized protein
STRINGORUFI04G03370.24e-44(Oryza rufipogon)