PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G03390.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 91aa    MW: 10674.2 Da    PI: 5.6901
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G03390.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR24.55.5e-0813371640
              TCR 16 kYCeCfaagkkCseeCkCedCkNke 40
                      YC Cf+a  +Cs++C+C++CkN+e
  ORUFI04G03390.1 13 VYCPCFSAYGYCSQNCHCTNCKNRE 37
                     5**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163414.218191IPR005172CRC domain
PfamPF036385.2E-61337IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MKSKDFLYYD LGVYCPCFSA YGYCSQNCHC TNCKNREYYE DFVEERVDMI KMKNPRAFDP  60
KIVRVQDASE IEPHSSNAVP MPEVQVPRTF V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315891e-101AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence.
GenBankAP0149601e-101AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633502.11e-42protein tesmin/TSO1-like CXC 4
RefseqXP_025880815.11e-42protein tesmin/TSO1-like CXC 4
TrEMBLA0A0E0P5E79e-62A0A0E0P5E7_ORYRU; Uncharacterized protein
STRINGORUFI04G03390.11e-62(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.15e-13Tesmin/TSO1-like CXC domain-containing protein