PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G09580.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 140aa    MW: 15732.1 Da    PI: 12.1835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G09580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.5e-1559109255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g+ GV+++   grW AeIrd    + ++  r ++g+f+ta eAa a++a  ++l+g
  ORUFI04G09580.1  59 GFLGVHQRT-YGRWSAEIRD----NvIKvSRLWIGTFDTALEAALAYDAVSRRLYG 109
                      788***999.8*********....77667********************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.70159117IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-1759117IPR016177DNA-binding domain
SMARTSM003807.5E-1659123IPR001471AP2/ERF domain
CDDcd000181.94E-1860118No hitNo description
PRINTSPR003672.4E-66071IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-2260117IPR001471AP2/ERF domain
PfamPF008477.6E-862109IPR001471AP2/ERF domain
PRINTSPR003672.4E-68399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MQVVHQLLNL SQTFRQEHRL SQIRWRLRPG ALALKLASAA AAAARSRRRR RRGEASKHGF  60
LGVHQRTYGR WSAEIRDNVI KVSRLWIGTF DTALEAALAY DAVSRRLYGL NAKTNFAAGE  120
DLPPLPPPPP PMAMRSSVTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14651RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550910.0CR855091.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0130K07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664719.22e-29PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A0E0P7N28e-97A0A0E0P7N2_ORYRU; Uncharacterized protein
STRINGORUFI04G09580.11e-97(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.13e-17ERF family protein