PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G11670.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 981aa    MW: 109773 Da    PI: 6.2757
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G11670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11772.3e-55111272117
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np f
  ORUFI04G11670.1  11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCF 104
                      67779***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylev 117
                      qrrc+w+Le ++e+ivlv+y+ev
  ORUFI04G11670.1 105 QRRCFWMLEPAYEHIVLVQYREV 127
                      *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3497133IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038597.2E-4713126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.8E-6400490IPR013783Immunoglobulin-like fold
PfamPF018333.5E-7400481IPR002909IPT domain
SuperFamilySSF812965.42E-16400482IPR014756Immunoglobulin E-set
SuperFamilySSF484031.17E-15431475IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.7E-16595691IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.17E-15595692IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.769597689IPR020683Ankyrin repeat-containing domain
CDDcd002041.50E-9602689No hitNo description
PfamPF127964.0E-7613691IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.927630662IPR002110Ankyrin repeat
SMARTSM002482.4E-4630659IPR002110Ankyrin repeat
SMARTSM002481800669698IPR002110Ankyrin repeat
SMARTSM0001527750772IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529751780IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.95809838IPR000048IQ motif, EF-hand binding site
SMARTSM0001519810830IPR000048IQ motif, EF-hand binding site
PfamPF006120.021811829IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.748852878IPR000048IQ motif, EF-hand binding site
SMARTSM0001535856871IPR000048IQ motif, EF-hand binding site
PfamPF006120.023857871IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 981 aa     Download sequence    Send to blast
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESLHSNLS  180
SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRWVDN SNSTNKSGLN  240
RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSEYQ PPGSLYNSDM  300
QQISAAKRFL LETEDSIDSP SYNYVPREEG NNGTNTLSVH DYSLQSSLNP DWKKTAPLTL  360
QSNLYGSEIP SLLLDHGQFE SLSSGENTRL ILGQNPRFSI REVSPEWTYC YEITKVIITG  420
DFLCDPSSSC WAVMFGDSEV PAEIVQAGVL RCHTPLHSSG KLTICVTSGN REICSEVKDF  480
EFRAKSTASS FLDISPSSRS LKSSEELLLL AKFVRMLLCE NGSHANSNGD PQSVQCPKLK  540
MNDEHWQRLI DELKGGCENP LNVSDWIMEE LLKSKLQQWL SVKLQGYDGI ACSLSKHEQG  600
IIHLISALGY EWALSSILSA DVGINFRDTN GWTALHWAAY FGREKMVAAL LAAGASAPAV  660
TDPTAQDPVG KTAAFLASER GHLGLAAYLS EVSLTSYLAS LTIQESDTSK GSAAAEAERA  720
VESISQRNAQ LHGGTEDELS LKDSLAAVRN AAQAAARIQN AFRAFSFRKR QQKTARLKDE  780
YGMTQEDIDE LAAASRSYYQ SLLPNGQFYD KAAVSIQKKF KGWKGRRHFL NMRRNAVKIQ  840
LYFTQAQGPY LSGPFFVQAH VRGHQVRKKY KTFVSTVSVL EKVILRWRRK GHGLRGFRAE  900
QTAMAEAEED DEDDDDDDFN DDEAVKVFRR QKVDESVKEA MSRVLSMVDS PEARMQYRRM  960
LEEFRQATVS STNCFSNALS L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635911.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A0E0P8B10.0A0A0E0P8B1_ORYRU; Uncharacterized protein
STRINGORUFI04G11670.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-144Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains