PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G15010.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 195aa    MW: 20861.6 Da    PI: 5.7683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G15010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-182373155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr++k +g+Wv+eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  ORUFI04G15010.1 23 CQYRGVRRRK-WGKWVSEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 73
                     68*****998.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575123No hitNo description
CDDcd000181.57E-302381No hitNo description
PfamPF008475.7E-122373IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-222482IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-312481IPR001471AP2/ERF domain
PROSITE profilePS5103223.7092481IPR001471AP2/ERF domain
SMARTSM003806.1E-372487IPR001471AP2/ERF domain
PRINTSPR003676.3E-102536IPR001471AP2/ERF domain
PRINTSPR003676.3E-104763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MVVAMGRSSS AMASAAAAAG GGCQYRGVRR RKWGKWVSEI RQPGTKTRIW LGSFESAEMA  60
AVAHDVAALR LRGRDAQLNF PGSVDRLPRP ASSRPGDIRA AAAEAADRVR REPALVVVRG  120
AAAAGGELAA VRWAGLEVEV EQQLGGSDEE FEVDSPRLWA EMAEAMLLDP PVWAVDVSEM  180
EGPHCWAHGS LWDAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-172285367ATERF1
3gcc_A2e-172285367ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316060.0AL731606.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058G03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194473.13e-75ethylene-responsive transcription factor ERF021-like
TrEMBLA0A0E0P9M01e-133A0A0E0P9M0_ORYRU; Uncharacterized protein
STRINGORUFI04G15010.11e-134(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.17e-25ERF family protein