PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G15060.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 183aa    MW: 21021.5 Da    PI: 8.8309
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G15060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72.1e-251058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi+fs++gk+ye +
  ORUFI04G15060.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVFSPHGKIYELA 58
                     8*********************************************965 PP
2K-box21.51e-081121535798
            K-box  57 qLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +Le  +++iRs+K++++ ++ie l++ke  l+ +n  L++++
  ORUFI04G15060.1 112 NLEVWVNNIRSTKMQIMSREIEMLKNKEGILKAANDILQERI 153
                      5777799*******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.35E-28177IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.24161IPR002100Transcription factor, MADS-box
CDDcd002651.34E-38275No hitNo description
PRINTSPR004042.8E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-241056IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.65167160IPR002487Transcription factor, K-box
PfamPF014862.8E-9112153IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVFSP HGKIYELATN  60
GNMQGLIERY KNKSNLPEAQ AESNEQNIPQ VIQQDVLLLR QEVDLLQNSL SNLEVWVNNI  120
RSTKMQIMSR EIEMLKNKEG ILKAANDILQ ERIIAQTSIM DVGCNMMIPQ VPFQLTTESN  180
YYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-15184183MEF2 CHIMERA
6byy_B2e-15184183MEF2 CHIMERA
6byy_C2e-15184183MEF2 CHIMERA
6byy_D2e-15184183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126123e-97CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194477.11e-102MADS-box transcription factor 26-like
RefseqXP_020194478.11e-102MADS-box transcription factor 26-like
SwissprotQ2QW555e-65MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A0E0P9N01e-132A0A0E0P9N0_ORYRU; Uncharacterized protein
STRINGORUFI04G15060.11e-133(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-53AGAMOUS-like 12