PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI04G18350.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 242aa MW: 26314.2 Da PI: 8.9658

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI04G18350.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.6e-12	170	215	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+ l+P+ +k s +++L +Av++Ik Lq ORUFI04G18350.2 170 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 215 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.215	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.67E-16	167	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.57E-12	168	219	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-14	169	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	170	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-13	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MFDGSFSSSA RPAGSSLGEV RHGAMSSSSN NKKKMKAPLS FASSRQGSGG LSQISEDGIP 60 DLTDSIHGAA HHHGRSEENV STHDHVVRSF SSGGFSIGSW EDSNSIVFST STGKSGAHGN 120 DDIIATLSNY ESQLVAPREM AGVEKYLQMQ HDQVPFRVRA KRGCATHPRS IAERERRTRI 180 SEKLRKLQAL VPNMDKQTST SDMLDLAVDH IKGLQSQLQT LKEDKEKCTC SCKQASRNRP 240 AD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068039	0.0	AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636683.1	1e-174	transcription factor bHLH129
Swissprot	Q8H102	1e-45	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0E0PAV5	1e-179	A0A0E0PAV5_ORYRU; Uncharacterized protein
STRING	ORUFI04G18350.1	1e-173	(Oryza rufipogon)
STRING	OBART04G16900.1	1e-174	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	1e-45	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]