PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G25150.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 164aa    MW: 17343.6 Da    PI: 9.333
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G25150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-054264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C + F++   L  H+++H
  ORUFI04G25150.1 42 YTCAFCRREFRSAQALGGHMNVH 64
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-63969No hitNo description
PROSITE profilePS5015711.0114269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MADVGGARRR RRAGAGRPPV PDEQLAADDV DGLGGTWPPR SYTCAFCRRE FRSAQALGGH  60
MNVHRRDRAK MRGHGLHGAA GQQLGAAEAP AAAAAARTEY AVALYPILNS GAGGAAVRIP  120
HGDMLLSAPV ALAAARRGHD HRCIDVGDDE NDKKIDLELR LGWP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-143764229superman protein
2l1o_A6e-143764229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629810.0AL662981.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880752.11e-104uncharacterized protein LOC112938737
TrEMBLA0A0E0PDD31e-112A0A0E0PDD3_ORYRU; Uncharacterized protein
STRINGORUFI04G25150.11e-113(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-22zinc-finger protein 10