PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G31260.4
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 269aa    MW: 30524.5 Da    PI: 9.1212
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G31260.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91.1e-19135230395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e++tl++ d +   +W++k+++  ++ks++yvl+  + +Fvk +gL++gD+++++ + +++++
  ORUFI04G31260.4 135 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVTLKMDDfKFETTWNFKYRFwpNNKSRMYVLE-STGGFVKHHGLQTGDIFIIYKS-SESGK 226
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      +vv+
  ORUFI04G31260.4 227 FVVR 230
                      7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-25131232IPR015300DNA-binding pseudobarrel domain
CDDcd100171.46E-22132230No hitNo description
SuperFamilySSF1019363.14E-19132228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.516133235IPR003340B3 DNA binding domain
SMARTSM010194.2E-9133233IPR003340B3 DNA binding domain
PfamPF023621.3E-15135230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MPRNPVYTSF HPAAIEDHHA PLFHSNNHDI DPGFQTNFRM DQAFVPASSP FPPVSSSSHS  60
FSSAKISNGP TYTKKAKKSN VKDPPIVFRR SDMESEKNDD NPDQTPVSEP PSMNQNGENL  120
IIRFNCREYR VILRKELTNS DVGNIGRIVM PKRDAEAHLP ALHQREGVTL KMDDFKFETT  180
WNFKYRFWPN NKSRMYVLES TGGFVKHHGL QTGDIFIIYK SSESGKFVVR GEKAIKPNAI  240
MPVVDCSCKN ELNKSEECGF TISLQTKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A9e-361302342106B3 domain-containing transcription factor FUS3
6j9b_D9e-361302342106B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.10.0putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC40.0Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0E0PFQ50.0A0A0E0PFQ5_ORYRU; Uncharacterized protein
STRINGOS04T0676650-000.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.18e-40B3 family protein