PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G01980.3

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1801aa MW: 192217 Da PI: 6.9699

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G01980.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.7e-07	948	990	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ ORUFI05G01980.3 948 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 990 899*************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.12E-13	931	993	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.547	944	995	IPR017884	SANT domain
SMART	SM00717	4.8E-7	945	993	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-5	948	990	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-5	948	992	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.728	1153	1204	IPR017884	SANT domain
SMART	SM00717	6.6E-4	1154	1202	IPR001005	SANT/Myb domain
CDD	cd00167	0.00139	1158	1196	No hit	No description
SuperFamily	SSF46689	1.71E-8	1158	1204	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1801 aa Download sequence Send to blast
MASTAAAASR RESSAASRTL VWSWWRGGRG GGVLGLPARP RERSWPLIVG QGRTQGCGSI 60 GVKGLGLRPL YRLTLSQAAA ASVFSPLLSS PPHLSPLSPS FSPAPRPPPP PPPPPPPPPS 120 LHADQGASAS AHAAADASPT WGALGAAACT SDCLPDSTPR ISSAACSTGG GEGKAWTSTS 180 LSDLRRPTSA AAAATDSAGD GSPGIGGGRR RCRAAAGAGD SRGLDDDDDD DHHAVDASAA 240 AGSEGLPVQG WPQARRRPPP TASPHAAEVA RLALPPAAAA TAPPRYGGGG GGGSRRDGRD 300 MRGSYRRSPF RGYGSDFSRN HQEHPPPPLR RSPLRSVAVP MSYDPPGDRA DRGDRDHHHR 360 VTPWRPLRRR ESRSDAADAA GAGPVPVGQA AAAAASEKDV SARSSAVAAP QVSEEEAPRK 420 KPRLGWGQGL AKYEKQKVQG PAESAEAVAE GSPTATEQKG ITHTPAPAPC VSPVAAPSPT 480 PCASPVAAPS PAPCVSPVAA PSPAPPCKSP VPEDKSCELT ANTVTESNKN IPGPDVQACN 540 NEVPTKLDQL EGDPIDSLAK VLSELVQHED SCSGDSKRLS NVSKLLLLKE SISKELEKTE 600 LEIDSLEGEL KSVNVEARNR TLKDPPTAVT YAQNPSPSPV KEQGELTPSP KISMEQDADV 660 KGSELMEIET AQAHNAKAVS SEESVACPGV ALGQVPAAAD VIPSDPCGKT GSGIDVDIEQ 720 REENPCQETF NAMKADGSSD LATRPCSYRE VKYNLMDQII AANRSEAKKN SQLLFKPVPA 780 DRSNLDLLAS SYLSSQMKND VIIKKKHAIL KNRQRFKEQI LTFKFRVLRH LWKEDVRLLS 840 VRKQRSKSHK RTDQSNRSSQ SGSQRQRSSN RSRLAVPAGN LSTFPITEMS GVARKLFSEF 900 QLKRCRNYLK MPALIVDEKE KAGAKFVSKN GLVEDPVSVE KERALINPWI QEEKEIFMEK 960 LATFGKDFSK ISSFLQHKTT ADCIEFYYKH HKSDSFREVK KLLDLRQQQQ PASNYLGAVS 1020 GKKWNPEANA ASLDMLGVAT EVAAQGLEYV NEVKKNSAKS ILRTVCGVDN STKGSEKDCV 1080 GDVSLHERES VAADVLAGIC GTLSPEGMGS CITSSADPGQ KIGIISRMEH LLTPEADKNF 1140 DDDGTLSDQE CEVDIVDWND DEKSSFIEAM NRYGKDFARI SSYVKSKSFE QCKVFFSKAR 1200 KSLGLDLIHQ GAADAGFPTG DANGGRSGTD GACIAEMDSA ICSAQSCPKV EIDACPVSDG 1260 EIQGHNPLSD IASRQPEADK SNMPDVVDIN VEEGESKAEK DCSILVDHKQ LREDINQTSC 1320 ARIDINCPES TDKLQDIEDV TPVNMHGDDL MATSVEQVAA AHVESRSSLH SEGIGIDVSR 1380 IEGCSHESTI GKGGKSTPSV CLPAENGVSK ENIIHFSNMD GASSISPAFT SNYQQSKLAD 1440 PIQSKPKPLT PKDLMPVQFS SSLPDPTSIC FEGIAAITTP NFEDHGNRAS IASGAKDVNM 1500 FPTFKDQSSN RHDALFSNVD GYMQQRRNNH FGTEVCGLSE STGISQSDQF TVSKFQNGRP 1560 SSLGLSNGNL GVLSTGRREE AREGLFRPCS VKTSAGNEEQ QKRPGDVKLF GQILSHQSSL 1620 QSSGSSVHGS KSKPPSPKVD KPASSRLLSN PRERLVYSSR PPIIANLGLE ERAMRSFDHM 1680 DGRTIQPEPM VMVAKCQRPS AGVPVYSTKN GTLSVFAEFQ QPSMPPHTSD HKLLENFADL 1740 HKRNGIELLS GFQQPGRLGG AGVLVSGVSD PVAALKAQYG SGSKMLSSSN DVDTWKDIGS 1800 R

Sequence ? help Back to Top

Protein Sequence Length: 1801 aa Download sequence Send to blast

MASTAAAASR RESSAASRTL VWSWWRGGRG GGVLGLPARP RERSWPLIVG QGRTQGCGSI  60
GVKGLGLRPL YRLTLSQAAA ASVFSPLLSS PPHLSPLSPS FSPAPRPPPP PPPPPPPPPS  120
LHADQGASAS AHAAADASPT WGALGAAACT SDCLPDSTPR ISSAACSTGG GEGKAWTSTS  180
LSDLRRPTSA AAAATDSAGD GSPGIGGGRR RCRAAAGAGD SRGLDDDDDD DHHAVDASAA  240
AGSEGLPVQG WPQARRRPPP TASPHAAEVA RLALPPAAAA TAPPRYGGGG GGGSRRDGRD  300
MRGSYRRSPF RGYGSDFSRN HQEHPPPPLR RSPLRSVAVP MSYDPPGDRA DRGDRDHHHR  360
VTPWRPLRRR ESRSDAADAA GAGPVPVGQA AAAAASEKDV SARSSAVAAP QVSEEEAPRK  420
KPRLGWGQGL AKYEKQKVQG PAESAEAVAE GSPTATEQKG ITHTPAPAPC VSPVAAPSPT  480
PCASPVAAPS PAPCVSPVAA PSPAPPCKSP VPEDKSCELT ANTVTESNKN IPGPDVQACN  540
NEVPTKLDQL EGDPIDSLAK VLSELVQHED SCSGDSKRLS NVSKLLLLKE SISKELEKTE  600
LEIDSLEGEL KSVNVEARNR TLKDPPTAVT YAQNPSPSPV KEQGELTPSP KISMEQDADV  660
KGSELMEIET AQAHNAKAVS SEESVACPGV ALGQVPAAAD VIPSDPCGKT GSGIDVDIEQ  720
REENPCQETF NAMKADGSSD LATRPCSYRE VKYNLMDQII AANRSEAKKN SQLLFKPVPA  780
DRSNLDLLAS SYLSSQMKND VIIKKKHAIL KNRQRFKEQI LTFKFRVLRH LWKEDVRLLS  840
VRKQRSKSHK RTDQSNRSSQ SGSQRQRSSN RSRLAVPAGN LSTFPITEMS GVARKLFSEF  900
QLKRCRNYLK MPALIVDEKE KAGAKFVSKN GLVEDPVSVE KERALINPWI QEEKEIFMEK  960
LATFGKDFSK ISSFLQHKTT ADCIEFYYKH HKSDSFREVK KLLDLRQQQQ PASNYLGAVS  1020
GKKWNPEANA ASLDMLGVAT EVAAQGLEYV NEVKKNSAKS ILRTVCGVDN STKGSEKDCV  1080
GDVSLHERES VAADVLAGIC GTLSPEGMGS CITSSADPGQ KIGIISRMEH LLTPEADKNF  1140
DDDGTLSDQE CEVDIVDWND DEKSSFIEAM NRYGKDFARI SSYVKSKSFE QCKVFFSKAR  1200
KSLGLDLIHQ GAADAGFPTG DANGGRSGTD GACIAEMDSA ICSAQSCPKV EIDACPVSDG  1260
EIQGHNPLSD IASRQPEADK SNMPDVVDIN VEEGESKAEK DCSILVDHKQ LREDINQTSC  1320
ARIDINCPES TDKLQDIEDV TPVNMHGDDL MATSVEQVAA AHVESRSSLH SEGIGIDVSR  1380
IEGCSHESTI GKGGKSTPSV CLPAENGVSK ENIIHFSNMD GASSISPAFT SNYQQSKLAD  1440
PIQSKPKPLT PKDLMPVQFS SSLPDPTSIC FEGIAAITTP NFEDHGNRAS IASGAKDVNM  1500
FPTFKDQSSN RHDALFSNVD GYMQQRRNNH FGTEVCGLSE STGISQSDQF TVSKFQNGRP  1560
SSLGLSNGNL GVLSTGRREE AREGLFRPCS VKTSAGNEEQ QKRPGDVKLF GQILSHQSSL  1620
QSSGSSVHGS KSKPPSPKVD KPASSRLLSN PRERLVYSSR PPIIANLGLE ERAMRSFDHM  1680
DGRTIQPEPM VMVAKCQRPS AGVPVYSTKN GTLSVFAEFQ QPSMPPHTSD HKLLENFADL  1740
HKRNGIELLS GFQQPGRLGG AGVLVSGVSD PVAALKAQYG SGSKMLSSSN DVDTWKDIGS  1800
R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-16	906	997	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-16	906	997	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070653	0.0	AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639126.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639127.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639128.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639129.1	0.0	uncharacterized protein LOC9268524
TrEMBL	A0A0E0PGZ1	0.0	A0A0E0PGZ1_ORYRU; Uncharacterized protein
STRING	OMERI05G01950.3	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	9e-77	MYB family protein