PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G01980.4

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 1870aa MW: 200949 Da PI: 7.5693

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G01980.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.7e-07	1017	1059	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W +eE e++ + + +G++ +++I++ ++ ++t +c+++++k+ ORUFI05G01980.4 1017 PWIQEEKEIFMEKLATFGKD-FSKISSFLQ-HKTTADCIEFYYKH 1059 899*************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.28E-13	1000	1062	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.547	1013	1064	IPR017884	SANT domain
SMART	SM00717	4.8E-7	1014	1062	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-5	1017	1059	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	1017	1061	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.728	1222	1273	IPR017884	SANT domain
SMART	SM00717	6.6E-4	1223	1271	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.79E-8	1227	1273	IPR009057	Homeodomain-like
CDD	cd00167	0.00145	1227	1265	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1870 aa Download sequence Send to blast
MASTAAAASR RESSAASRTL VWSWWRGGRG GGVLGLPARP RERSWPLIVG QGRTQGCGSI 60 GVKGLGLRPL YRLTLSQAAA ASVFSPLLSS PPHLSPLSPS FSPAPRPPPP PPPPPPPPPS 120 LHADQGASAS AHAAADASPT WGALGAAACT SDCLPDSTPR ISSAACSTGG GEGKAWTSTS 180 LSDLRRPTSA AAAATDSAGD GSPGIGGGRR RCRVGFFAAR MRRPELGIRA GWTTTTTTTT 240 TPWMPPPPPD RRDFLYRDGR RHDGDPLPPP APTPPRWRDS PYHPPPPPPP LRDHSRPSPR 300 RTPSSASSDG YYRQGGGSYD RSYPDESLGY TPSRSDRYWL DDDGGGGGYK GFSRYGGGGG 360 GGSRRDGRDM RGSYRRSPFR GYGSDFSRNH QEHPPPPLRR SPLRSVAVPM SYDPPGDRAD 420 RGDRDHHHRV TPWRPLRRRE SRSDAADAAG AGPVPVGQAA AAAASEKDVS ARSSAVAAPQ 480 VSEEEAPRKK PRLGWGQGLA KYEKQKVQGP AESAEAVAEG SPTATEQKGI THTPAPAPCV 540 SPVAAPSPTP CASPVAAPSP APCVSPVAAP SPAPPCKSPV PEDKSCELTA NTVTESNKNI 600 PGPDVQACNN EVPTKLDQLE GDPIDSLAKV LSELVQHEDS CSGDSKRLSN VSKLLLLKES 660 ISKELEKTEL EIDSLEGELK SVNVEARNRT LKDPPTAVTY AQNPSPSPVK EQGELTPSPK 720 ISMEQDADVK GSELMEIETA QAHNAKAVSS EESVACPGVA LGQVPAAADV IPSDPCGKTG 780 SGIDVDIEQR EENPCQETFN AMKADGSSDL ATRPCSYREV KYNLMDQIIA ANRSEAKKNS 840 QLLFKPVPAD RSNLDLLASS YLSSQMKNDV IIKKKHAILK NRQRFKEQIL TFKFRVLRHL 900 WKEDVRLLSV RKQRSKSHKR TDQSNRSSQS GSQRQRSSNR SRLAVPAGNL STFPITEMSG 960 VARKLFSEFQ LKRCRNYLKM PALIVDEKEK AGAKFVSKNG LVEDPVSVEK ERALINPWIQ 1020 EEKEIFMEKL ATFGKDFSKI SSFLQHKTTA DCIEFYYKHH KSDSFREVKK LLDLRQQQQP 1080 ASNYLGAVSG KKWNPEANAA SLDMLGVATE VAAQGLEYVN EVKKNSAKSI LRTVCGVDNS 1140 TKGSEKDCVG DVSLHERESV AADVLAGICG TLSPEGMGSC ITSSADPGQK IGIISRMEHL 1200 LTPEADKNFD DDGTLSDQEC EVDIVDWNDD EKSSFIEAMN RYGKDFARIS SYVKSKSFEQ 1260 CKVFFSKARK SLGLDLIHQG AADAGFPTGD ANGGRSGTDG ACIAEMDSAI CSAQSCPKVE 1320 IDACPVSDGE IQGHNPLSDI ASRQPEADKS NMPDVVDINV EEGESKAEKD CSILVDHKQL 1380 REDINQTSCA RIDINCPEST DKLQDIEDVT PVNMHGDDLM ATSVEQVAAA HVESRSSLHS 1440 EGIGIDVSRI EGCSHESTIG KGGKSTPSVC LPAENGVSKE NIIHFSNMDG ASSISPAFTS 1500 NYQQSKLADP IQSKPKPLTP KDLMPVQFSS SLPDPTSICF EGIAAITTPN FEDHGNRASI 1560 ASGAKDVNMF PTFKDQSSNR HDALFSNVDG YMQQRRNNHF GTEVCGLSES TGISQSDQFT 1620 VSKFQNGRPS SLGLSNGNLG VLSTGRREEA REGLFRPCSV KTSAGNEEQQ KRPGDVKLFG 1680 QILSHQSSLQ SSGSSVHGSK SKPPSPKVDK PASSRLLSNP RERLVYSSRP PIIANLGLEE 1740 RAMRSFDHMD GRTIQPEPMV MVAKCQRPSA GVPVYSTKNG TLSVFAEFQQ PSMPPHTSDH 1800 KLLENFADLH KRNGIELLSG FQQPGRLGGA GVLVSGVSDP VAALKAQYGS GSKMLSSSND 1860 VDTWKDIGSR

Sequence ? help Back to Top

Protein Sequence Length: 1870 aa Download sequence Send to blast

MASTAAAASR RESSAASRTL VWSWWRGGRG GGVLGLPARP RERSWPLIVG QGRTQGCGSI  60
GVKGLGLRPL YRLTLSQAAA ASVFSPLLSS PPHLSPLSPS FSPAPRPPPP PPPPPPPPPS  120
LHADQGASAS AHAAADASPT WGALGAAACT SDCLPDSTPR ISSAACSTGG GEGKAWTSTS  180
LSDLRRPTSA AAAATDSAGD GSPGIGGGRR RCRVGFFAAR MRRPELGIRA GWTTTTTTTT  240
TPWMPPPPPD RRDFLYRDGR RHDGDPLPPP APTPPRWRDS PYHPPPPPPP LRDHSRPSPR  300
RTPSSASSDG YYRQGGGSYD RSYPDESLGY TPSRSDRYWL DDDGGGGGYK GFSRYGGGGG  360
GGSRRDGRDM RGSYRRSPFR GYGSDFSRNH QEHPPPPLRR SPLRSVAVPM SYDPPGDRAD  420
RGDRDHHHRV TPWRPLRRRE SRSDAADAAG AGPVPVGQAA AAAASEKDVS ARSSAVAAPQ  480
VSEEEAPRKK PRLGWGQGLA KYEKQKVQGP AESAEAVAEG SPTATEQKGI THTPAPAPCV  540
SPVAAPSPTP CASPVAAPSP APCVSPVAAP SPAPPCKSPV PEDKSCELTA NTVTESNKNI  600
PGPDVQACNN EVPTKLDQLE GDPIDSLAKV LSELVQHEDS CSGDSKRLSN VSKLLLLKES  660
ISKELEKTEL EIDSLEGELK SVNVEARNRT LKDPPTAVTY AQNPSPSPVK EQGELTPSPK  720
ISMEQDADVK GSELMEIETA QAHNAKAVSS EESVACPGVA LGQVPAAADV IPSDPCGKTG  780
SGIDVDIEQR EENPCQETFN AMKADGSSDL ATRPCSYREV KYNLMDQIIA ANRSEAKKNS  840
QLLFKPVPAD RSNLDLLASS YLSSQMKNDV IIKKKHAILK NRQRFKEQIL TFKFRVLRHL  900
WKEDVRLLSV RKQRSKSHKR TDQSNRSSQS GSQRQRSSNR SRLAVPAGNL STFPITEMSG  960
VARKLFSEFQ LKRCRNYLKM PALIVDEKEK AGAKFVSKNG LVEDPVSVEK ERALINPWIQ  1020
EEKEIFMEKL ATFGKDFSKI SSFLQHKTTA DCIEFYYKHH KSDSFREVKK LLDLRQQQQP  1080
ASNYLGAVSG KKWNPEANAA SLDMLGVATE VAAQGLEYVN EVKKNSAKSI LRTVCGVDNS  1140
TKGSEKDCVG DVSLHERESV AADVLAGICG TLSPEGMGSC ITSSADPGQK IGIISRMEHL  1200
LTPEADKNFD DDGTLSDQEC EVDIVDWNDD EKSSFIEAMN RYGKDFARIS SYVKSKSFEQ  1260
CKVFFSKARK SLGLDLIHQG AADAGFPTGD ANGGRSGTDG ACIAEMDSAI CSAQSCPKVE  1320
IDACPVSDGE IQGHNPLSDI ASRQPEADKS NMPDVVDINV EEGESKAEKD CSILVDHKQL  1380
REDINQTSCA RIDINCPEST DKLQDIEDVT PVNMHGDDLM ATSVEQVAAA HVESRSSLHS  1440
EGIGIDVSRI EGCSHESTIG KGGKSTPSVC LPAENGVSKE NIIHFSNMDG ASSISPAFTS  1500
NYQQSKLADP IQSKPKPLTP KDLMPVQFSS SLPDPTSICF EGIAAITTPN FEDHGNRASI  1560
ASGAKDVNMF PTFKDQSSNR HDALFSNVDG YMQQRRNNHF GTEVCGLSES TGISQSDQFT  1620
VSKFQNGRPS SLGLSNGNLG VLSTGRREEA REGLFRPCSV KTSAGNEEQQ KRPGDVKLFG  1680
QILSHQSSLQ SSGSSVHGSK SKPPSPKVDK PASSRLLSNP RERLVYSSRP PIIANLGLEE  1740
RAMRSFDHMD GRTIQPEPMV MVAKCQRPSA GVPVYSTKNG TLSVFAEFQQ PSMPPHTSDH  1800
KLLENFADLH KRNGIELLSG FQQPGRLGGA GVLVSGVSDP VAALKAQYGS GSKMLSSSND  1860
VDTWKDIGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-16	975	1066	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-16	975	1066	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070653	0.0	AK070653.1 Oryza sativa Japonica Group cDNA clone:J023055D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639126.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639127.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639128.1	0.0	uncharacterized protein LOC9268524
Refseq	XP_015639129.1	0.0	uncharacterized protein LOC9268524
TrEMBL	A0A0E0PGZ2	0.0	A0A0E0PGZ2_ORYRU; Uncharacterized protein
STRING	ORUFI05G01980.4	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-76	MYB family protein