PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G12600.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 191aa    MW: 21546.9 Da    PI: 10.8433
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G12600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.21e-0615353757
                     CTS-HHHHHHHHHHHHHHHHC CS
         Homeobox 37 lgLterqVkvWFqNrRakekk 57
                     +gLt++q ++WF+ rR k++k
  ORUFI05G12600.1 15 TGLTDKQLQMWFCHRRLKDRK 35
                     69*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.199136IPR001356Homeobox domain
SuperFamilySSF466893.08E-6242IPR009057Homeodomain-like
CDDcd000861.78E-4236No hitNo description
Gene3DG3DSA:1.10.10.604.3E-51535IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKTPYQLEVL KRTYTGLTDK QLQMWFCHRR LKDRKPPPKR QQLEEEVHVP VMAPPPVLPP  60
PLPHSELTMA PGGMYGEQLL PSSSRRGTGR PSAILDMSDL QCLPLLTSHG TKSSPGEMIR  120
LRWDTTDSEE VVRTRIPSST PGQHKARVLP AAGRGWPDTR GPPASPPWPT RCPLSLHTYP  180
PRRHRLRQPS V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713021e-176AK071302.1 Oryza sativa Japonica Group cDNA clone:J023088K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0PKR11e-133A0A0E0PKR1_ORYRU; Uncharacterized protein
STRINGORUFI05G12600.11e-134(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2352544