PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G13870.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 202aa    MW: 21734.4 Da    PI: 12.3274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G13870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99e-124982239
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgta 39
                     +y+GVr+++ +g+WvAeIr+p++   r r +lg+f ta
  ORUFI05G13870.1 49 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATA 82
                     59****999.**********954...5********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-84991IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-104982IPR016177DNA-binding domain
PROSITE profilePS5103214.6184982IPR001471AP2/ERF domain
CDDcd000182.11E-134982No hitNo description
PfamPF008471.7E-64981IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-164982IPR001471AP2/ERF domain
PRINTSPR003673.8E-65061IPR001471AP2/ERF domain
PRINTSPR003673.8E-67288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009749Biological Processresponse to glucose
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEPSDDACTV AAPAAETAAS SSGAGGGGGG GRTKKKAAGK GGPENGKFRY RGVRQRSWGK  60
WVAEIREPRK RSRKWLGTFA TAXPPPPLRP LLPRPPHLHP AFHHQPFHHH LLQPQPPPPP  120
PPLYYAATAS TSTVTTTTTA PPPQLAAAAP AAVLVAAAVS STAETQRRRR RRRRRRPRGA  180
STAATRRTTR RRYCGASRTP DE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171QRRRRRR
2167175RRRRRRRRR
3167177RRRRRRRRRPR
4168175RRRRRRRR
5169175RRRRRRR
6170177RRRRRRPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-138CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0PL551e-136A0A0E0PL55_ORYRU; Uncharacterized protein
STRINGORUFI05G13870.11e-137(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133032632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-17ERF family protein