PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G17320.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 838aa    MW: 91790.2 Da    PI: 6.1924
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G17320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.45.6e-35167241276
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      Cqv+gCead+ e+k yhrrh+vC  +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  ORUFI05G17320.1 167 CQVPGCEADIRELKGYHRRHRVCLRCAHAAAVMLDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 241
                      ************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-27161228IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.487164241IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-33165244IPR004333Transcription factor, SBP-box
PfamPF031106.8E-27167241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MDAPGGGGGG GGVDAGEPVW DWGNLLDFAV HDDDSLVLPW GDDSIGIEAD PAEAALLPPA  60
PSPQPAEAEA EAAGPASLPS SMQAEGSKRR VRKRDPRLVC PNYLAGRVPC ACPEIDEMAA  120
ALEVEDVATE LLAGARKKPK GAGRGSGAAV GGSGGGASRG TPAEMKCQVP GCEADIRELK  180
GYHRRHRVCL RCAHAAAVML DGVQKRYCQQ CGKFHILLDF DEDKRSCRRK LERHNKRRRR  240
KPDSKGILEK DIDDQLDFSA DGSGDGELRE ENIDVTTSET LETVLSNKVL DRETPVGSDD  300
VLSSPTCAQP SLQIDQSKSL VTFAASVEAC LGTKQENTKL TNSPVHDTKS TYSSSCPTGR  360
VSFKLYDWNP AEFPRRLRHQ IFEWLSSMPV ELEGYIRPGC TILTVFVAMP QHMWDKLSED  420
TGNLVKSLVN APNSLLLGKG AFFIHVNNMI FQVLKDGATL TSTRLEVQSP RIHYVHPSWF  480
EAGKPIDLIL CGSSLDQPKF RSLVSFDGLY LKHDCRRILS HETFDCIGSG EHILDSQHEI  540
FRINITTSKL DTHGPAFVEV ENMFGLSNFV PILVGSKHLC SELEQIHDAL CGSSDISSDP  600
CELRGLRQTA MLGFLIDIGW LIRKPSIDEF QNLLSLANIQ RWICMMKFLI QNDFINVLEI  660
IVNSLDNIIG SELLSNLEKG RLENHVTEFL GYVSEARNIV DNRPKYDKQR QVDTRWAGDY  720
APNQPKLGIS VPLAESTGTS GEHDLHSTNA ASGEEENMPL VTKALPHRQC CHPETSARWL  780
NAASIGAFPG GAMRMRLATT VVIGAVVCFA ACVVLFHPHR VGVLAAPVKR YLSRNYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A3e-37166246585squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223241KRSCRRKLERHNKRRRRKP
2227239RRKLERHNKRRRR
3234241NKRRRRKP
4235240KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1000570.0AK100057.1 Oryza sativa Japonica Group cDNA clone:J013158B16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640052.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLA0A0E0PME10.0A0A0E0PME1_ORYRU; Uncharacterized protein
STRINGORUFI05G17320.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-144squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]