PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G18090.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 179aa    MW: 18373.4 Da    PI: 10.5801
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G18090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2232e-071838223
              AP2  2 gykGVrwdkkrgrWvAeIrdps 23
                     +y+GVr+++ +g+Wv+eIr+p 
  ORUFI05G18090.1 18 RYRGVRRRR-WGKWVSEIRVPG 38
                     59****777.**********84 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.9161874IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-81843IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-51844IPR016177DNA-binding domain
SMARTSM003800.00511872IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGRVAASGGG GGGGEMMRYR GVRRRRWGKW VSEIRVPGTR ERLRPPARPQ PARRAAAGGG  60
GGLNFPARAL AAAAAASSYG GAGGLLSPRS VQRVASDAGM AADAQLVDLR RDHPPAAAAA  120
SSSGSGVAGD GARKQGTRGE VSDTYWCSNG EDGSRSWSSG SEELIVYEGL SVDDMEILM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1248360.0AC124836.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092E21, complete sequence.
GenBankAC1376230.0AC137623.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0426G01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638993.12e-49ethylene-responsive transcription factor ERF014
TrEMBLA0A0E0PMN01e-119A0A0E0PMN0_ORYRU; Uncharacterized protein
STRINGORUFI05G18090.11e-120(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951