PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI05G19090.2

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 388aa MW: 40597.9 Da PI: 11.2536

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI05G19090.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.7	3e-14	300	352	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r++r++kNRe+A rsR+RK+a+i+eLe v+eLe+e +L e ee +++ ORUFI05G19090.2 300 AMQRQKRMIKNRESAARSRERKQAYIAELEAQVAELEEEHAQLLREQEEKNQK 352 679***************************************99877765554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.0E-10	298	367	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.875	300	348	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-12	300	351	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-10	302	351	No hit	No description
CDD	cd14707	1.61E-18	302	348	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.3E-13	303	349	No hit	No description
PROSITE pattern	PS00036	0	305	320	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MIPISTVFTP TLVKDLSRAD NPRPRAGGLA KTQKHTHAAH SAVTHTRGLP PSLPHVTSHA 60 SRRSLAFALV SSTLSLFPFR LQPTNHPPTT ARAAVQPASC RAARGRRGSG AGGRMASSRV 120 MAAAAASSSS SPPPPPPAAA AAGGAADLAR FRSTSSGIGS MNMDDILRNI YGEAAPPPGA 180 AGSAPAPPPA GEAAGAPVAE VAARRTAEEV WKEISSSGGL SAPAPAPAAG AAGRGGGPEM 240 TLEDFLARED DPRATAVEGN MVVGFPNVTE GVGTAGGGRG GGGGGRGRKR TLMDPADRAA 300 MQRQKRMIKN RESAARSRER KQAYIAELEA QVAELEEEHA QLLREQEEKN QKRLKEKWHV 360 FMQIKEQAVA VVIRKKTQDL RRTNSMEW

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MIPISTVFTP TLVKDLSRAD NPRPRAGGLA KTQKHTHAAH SAVTHTRGLP PSLPHVTSHA  60
SRRSLAFALV SSTLSLFPFR LQPTNHPPTT ARAAVQPASC RAARGRRGSG AGGRMASSRV  120
MAAAAASSSS SPPPPPPAAA AAGGAADLAR FRSTSSGIGS MNMDDILRNI YGEAAPPPGA  180
AGSAPAPPPA GEAAGAPVAE VAARRTAEEV WKEISSSGGL SAPAPAPAAG AAGRGGGPEM  240
TLEDFLARED DPRATAVEGN MVVGFPNVTE GVGTAGGGRG GGGGGRGRKR TLMDPADRAA  300
MQRQKRMIKN RESAARSRER KQAYIAELEA QVAELEEEHA QLLREQEEKN QKRLKEKWHV  360
FMQIKEQAVA VVIRKKTQDL RRTNSMEW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	284	GGRGGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00648	PBM	Transfer from LOC_Os05g36160	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC105318	0.0	AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBank	AC134930	0.0	AC134930.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0042J17, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639395.1	1e-119	bZIP transcription factor 12-like
Swissprot	Q0JHF1	5e-58	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0E0PN12	0.0	A0A0E0PN12_ORYRU; Uncharacterized protein
STRING	ORUFI05G19090.2	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-12	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]