PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G20710.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 85aa    MW: 10046.4 Da    PI: 6.5049
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G20710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB841.8e-2615614995
            NF-YB 49 easdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                      asdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre+e 
  ORUFI05G20710.1 15 RASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEM 61
                     69*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-221568IPR009072Histone-fold
PfamPF008087.1E-51537IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.42E-171567IPR009072Histone-fold
PRINTSPR006151.4E-122038No hitNo description
PRINTSPR006151.4E-123957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MRCDWVFVVV GQHYRASDKC QREKRKTING DDLLWAMATL GFEDYIEPLK VYLQKYREME  60
MGQQAAYNQG MGYMQPQYHN GDVSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-1816585193NF-YB
4awl_B2e-1816585294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-1816585294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085003e-92AC108500.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1280_A04, complete sequence.
GenBankAP0149613e-92AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126133e-92CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106052.29e-40nuclear transcription factor Y subunit B
RefseqXP_020394778.19e-40nuclear transcription factor Y subunit B isoform X1
RefseqXP_020394779.19e-40nuclear transcription factor Y subunit B isoform X1
RefseqXP_020394780.19e-40nuclear transcription factor Y subunit B isoform X1
RefseqXP_020394781.19e-40nuclear transcription factor Y subunit B isoform X1
SwissprotP252097e-41NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A0E0PNM93e-58A0A0E0PNM9_ORYRU; Uncharacterized protein
STRINGORUFI05G20710.16e-59(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-28nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]