PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI05G26590.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 238aa    MW: 24640 Da    PI: 10.1874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI05G26590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.67.2e-21881503092
                      ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      +++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F++   ++++l
  ORUFI05G26590.1  88 HQRGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQL 150
                      3477899***********************************************765555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.001769157IPR003340B3 DNA binding domain
SuperFamilySSF1019361.7E-1887155IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-2487164IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-1889152IPR003340B3 DNA binding domain
PROSITE profilePS5086311.1894158IPR003340B3 DNA binding domain
CDDcd100172.97E-1696142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDSTSCLLDD ASSGASTGKK AAAAAASKAL QRVGSGASAV MDAAEPGAEA DSGGERRGGG  60
GGKLPSSKYK GVVPQPNGRW GAQIYERHQR GVLLNFEDAA GKVWKFRYSY WNSSQSYVLT  120
KGWSRFVKEK GLHAGDAVGF YRAAGKNAQL FIDCKVRAKP TTAAAAAAFL SAVAAAAAPP  180
PAVKAIRLFG VDLLTAAAPE LQDAGGAAMT KSKRAMDAMA ESQAHVVFKK QCIELALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-309015850118DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1307250.0AC130725.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0494H05, complete sequence.
GenBankAC1359250.0AC135925.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0560C03, complete sequence.
GenBankAC1364920.0AC136492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0554F08, complete sequence.
GenBankAK2433630.0AK243363.1 Oryza sativa Japonica Group cDNA, clone: J100061M08, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655554.12e-81PREDICTED: AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H49e-79Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A0E0PQU11e-170A0A0E0PQU1_ORYRU; Uncharacterized protein
STRINGORUFI05G26590.11e-171(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2906334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.29e-33related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]