PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G03050.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 610aa    MW: 64438.1 Da    PI: 7.7334
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G03050.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-30279338159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  ORUFI06G03050.3 279 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 338
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-32264338IPR003657WRKY domain
SuperFamilySSF1182903.01E-27272339IPR003657WRKY domain
PROSITE profilePS5081128.311274340IPR003657WRKY domain
SMARTSM007743.4E-37279339IPR003657WRKY domain
PfamPF031062.9E-27280338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MKEEMIKGDS KQLASMYMKE EMIKGERQLG THEDRLKDEV IKDGDKISDG NFFKSLQNIS  60
STKEEVCSPG PIERSCMDSS LLNMKAQNKG QDDKLESTRA EMGEVREENE RLKTLLSRIS  120
HDYRSLQTHF YDVLQQGRAK KLPDSPATDI EEPEFVSLRL GTSTSKCKKE DKSTTSSEVK  180
GSTEDFLKIK GGLSLGLSDC RVDANNSEKV QPDVMTLSPE GSFEDARDDT AETTEQWPPS  240
KMLKNLRSVG AEAEDDIAPQ PQVKKARVSV RARCDAPTMN DGCQWRKYGQ KIAKGNPCPR  300
AYYRCTVAAG CPVRKQVQRC ADDMSILITT YEGTHNHPLS VSATAMASTT SAAASMLISG  360
SSSTSLAAYP AAAASPALAF DASSKPPLIG GRPFFLPTAA AAAITSTPSY PTITLDLTSP  420
AAAATSSHAA FSLSNRFSHT RYPSTGFTFS GSGPSSAPWP GYLSYGASLS AHPTSGRGQR  480
GGGGGGGSAP PLYQMQQKAA AAPPPPPSVI TDTIAKAITA DPSFHTALAA AITSYVGKKG  540
SPPASGGEDS KVGLKWGEHL GLGLTHSSPS TAAAAAASSS SQMFLQPSLG LSGSTTSAST  600
SPVANREQAH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-202793391776Probable WRKY transcription factor 4
2lex_A6e-202793391776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643468.10.0probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0E0PTH50.0A0A0E0PTH5_ORYRU; Uncharacterized protein
STRINGORUFI06G03050.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-65WRKY DNA-binding protein 72