PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI06G06900.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 257aa MW: 27758.1 Da PI: 9.5524

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI06G06900.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed+ l+ ++k +G g W+ ++++ g++R++k+c++rw++yl ORUFI06G06900.1 14 RGAWTSKEDDVLASYIKSHGEGKWREVPQRAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	50	6.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +E+el+v+++++lG++ W++Ia +++ gRt++++k++w++ ORUFI06G06900.1 67 RGNIDDDEEELIVRLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111 6777789*************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-22	6	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.29	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.82E-27	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.37E-8	16	61	No hit	No description
PROSITE profile	PS51294	24.966	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-23	64	116	IPR009057	Homeodomain-like
SMART	SM00717	9.0E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-13	68	111	IPR001005	SANT/Myb domain
CDD	cd00167	6.13E-10	72	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006633	Biological Process	fatty acid biosynthetic process
GO:0006970	Biological Process	response to osmotic stress
GO:0010023	Biological Process	proanthocyanidin biosynthetic process
GO:0090379	Biological Process	secondary cell wall biogenesis involved in seed trichome differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGRRACCAKE GMKRGAWTSK EDDVLASYIK SHGEGKWREV PQRAGLRRCG KSCRLRWLNY 60 LRPNIKRGNI DDDEEELIVR LHTLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSRKIGTAA 120 TAAAGSRGGS TPDTARATDA ASSSSVVPPG QQQQPASRAD TDTATAAAAA AATTTTVWAP 180 KAVRCTRGFF FHDRETAPLA AAAPAPAGEL GDGDDVDCDY YCSGSTDVVE LIPGGRRAVL 240 LRRRRLDGRR ESLGDIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-25	12	118	5	110	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ379703	0.0	HQ379703.1 Oryza sativa Japonica Group isolate Z418-A C1 protein (C1) mRNA, complete cds.
GenBank	Y15219	0.0	Y15219.1 Oryza sativa mRNA for transcriptional activator.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642631.1	1e-128	anthocyanin regulatory C1 protein
Swissprot	P10290	2e-83	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A0E0PUU7	0.0	A0A0E0PUU7_ORYRU; Uncharacterized protein
STRING	ORUFI06G06900.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	2e-58	myb domain protein 7

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]