PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G08510.2
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 922aa    MW: 103926 Da    PI: 7.5354
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G08510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK87.41.2e-27799849252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek +++e +s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl
  ORUFI06G08510.2 799 EKALTFELVSQYFYMPITQAARELNVGLTLLKKKCRELGIPRWPHRKMKSL 849
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.109.7E-1238313IPR011990Tetratricopeptide-like helical domain
SuperFamilySSF484525.22E-544401IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.68166100IPR002885Pentatricopeptide repeat
PfamPF015350.546894IPR002885Pentatricopeptide repeat
PfamPF128541.6E-9129158IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.748131165IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.1E-7133161IPR002885Pentatricopeptide repeat
PfamPF015352.5E-4165191IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.4E-5165192IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.974166192IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.133193228IPR002885Pentatricopeptide repeat
PfamPF015350.0065196217IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.966229263IPR002885Pentatricopeptide repeat
PfamPF015352.4E-4232256IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.3E-5232256IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.567274308IPR002885Pentatricopeptide repeat
PfamPF015351.9E-4276305IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.9E-5276306IPR002885Pentatricopeptide repeat
PfamPF015351.2E-7307333IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.0E-5307332IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.73309335IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.709336370IPR002885Pentatricopeptide repeat
PfamPF015352.3E-5338367IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007563.9E-4338367IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.109.7E-12365397IPR011990Tetratricopeptide-like helical domain
PfamPF130412.7E-9368414IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.2E-5369402IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.068371401IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.086402432IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.6E-6433498IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.594436466IPR002885Pentatricopeptide repeat
PfamPF015350.0072441466IPR002885Pentatricopeptide repeat
PfamPF130414.2E-11467515IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.255468502IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-7470503IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.487503533IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0016505537IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.059539569IPR002885Pentatricopeptide repeat
PfamPF015350.55543567IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.103.6E-6602626IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.511605639IPR002885Pentatricopeptide repeat
PROSITE profilePS5151918.974785869IPR003035RWP-RK domain
PfamPF020424.7E-21802849IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016554Biological Processcytidine to uridine editing
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MRTRPPPVPA AAHRRATATA AGAAPAPAPA AADDLVMRHN RSLAALLRAG RYGAARRLFD  60
ALPARSVVTW NSLLAGLARR PDARAAREFF DAMPVRDAVS WNTLLAAYSA SPHPDHLAAA  120
RRLFDEMPQR DVVTWNTLLG AYARRGLMDE ARRLFDEMPQ RNAASWNTMV TGFFAAGQVV  180
KALDVFDAMP AKDSASLSTM VSGFTKNGML HEAEELLTKR LSVTDMDKAV DAYNTLIVAY  240
GQAGRFSDAK RLFDMIPKGQ YQHNMLKRKG FERNVVSWNS MMICYIKAGD VCSARALFNE  300
MPDKDLVSWN TMISGYTQAS DMKEAEKLFW EMPDPDTVSW NLIIQGFMQK GEAEHARGFF  360
DRMPERGTIS WNTMISGYEK NGNYISSVKL FSKMLEVGEI PDRHTFSSVL AACASIPMLG  420
LGAQIHQLVE KSFVPDTAIS NALITMYSRC GALNDAEAIF KQMHTKKDLV SWNALIGCYE  480
HHGRATKALQ LFKEMRRAKV MPTHITFVSL LSACVNAGLV SEGRMVFDTM VHEYGIVARI  540
EHYAALVNLI GRHGQLDDAL EVINSMPMAP DRSVWGAFLG ACTAKKNEPL AQMAAKELST  600
INPDSSAPYV LIHNLHAHEG KWGSAAVVRE EMERQGVYKQ PGYSWIDLEG KMHVFISGDT  660
WHPNAQEIFS VLEDWQWHNP MSLEMNQLTQ VKLIAKRNNQ LVALFLWPDS YLLEEEALFS  720
SLSFPSFHPQ PVYSTVMQSN VLQDELGVIF EDDVLKYWDE MEQSENKVEK SEKGLPLLYY  780
GDENGAASKI MRDDVRSEEK ALTFELVSQY FYMPITQAAR ELNVGLTLLK KKCRELGIPR  840
WPHRKMKSLQ TLINNVQVLQ EASKANNEEQ LRMLVEMLQE ERRLLEQKPY VQLEEKTKRL  900
RQACFKANYK KRRLLALEAG EP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9d_A8e-60266372421pentatricopeptide repeat protein dPPR-U8A2
5i9g_C1e-59266371421pentatricopeptide repeat protein dPPR-U8C2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035090.0AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBankAP0035690.0AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882382.10.0pentatricopeptide repeat-containing protein At1g62260, mitochondrial isoform X1
TrEMBLA0A0E0PVE20.0A0A0E0PVE2_ORYRU; Uncharacterized protein
STRINGONIVA06G09450.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-35RWP-RK domain-containing protein