PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G10660.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 386aa    MW: 42389.7 Da    PI: 6.6314
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G10660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.7e-1094134444
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                       k +rr+++NReAAr+sR RKka+i++Le    +L    ++
  ORUFI06G10660.1  94 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQE 134
                      589**************************977777655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-791190IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.58893137IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-795138No hitNo description
PfamPF001701.5E-795135IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-895139No hitNo description
PROSITE patternPS00036098113IPR004827Basic-leucine zipper domain
PfamPF141441.8E-30180256IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAAHQGMAAA TAADRFCLPR MAAAAAAASQ VENWGDSGVI VSSPFTDDTS TDLDDSADKH  60
HLHALVGGGD GGDDAGEQRG ADSSAVSKER RGDQKMQRRL AQNREAARKS RMRKKAYIQQ  120
LESSRSKLMH LEQELQRARQ QGIFIATGGS GDHGHSIGGN GGTLAFDLEY ARWLDEHQRH  180
INDLRVALNA QMSDDELCEL VDAVMMHYDQ VFRLKSFATK SDVFHVLSGM WMSPAERFFM  240
WLGGFRSSEL LKVLASHLEP LTDQQLMGIC NLQQSSQQAE DALSQGMEAL QQTLGDTLVS  300
AAATVVSGGG GADNVTNYMG QMAIAMAKLT TLENFLRQAD LLRHQTLQQM HRILTTRQAA  360
RALLVISDYF SRLRALSSLW LARPRD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881815.10.0transcription factor TGAL3-like isoform X2
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA3BAH70.0A3BAH7_ORYSJ; Uncharacterized protein
STRINGORUFI06G10660.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-119bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]